View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16379_high_15 (Length: 322)
Name: NF16379_high_15
Description: NF16379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16379_high_15 |
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Alignment Details
Target: chr1 (Bit Score: 286; Significance: 1e-160; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 13 - 306
Target Start/End: Original strand, 33115748 - 33116041
Alignment:
| Q |
13 |
cagagacaaggagggaatgattttggtttgtttacaaaaaggtttcttcgccgccatggacttcacttgcttggaactgctatgacttggttcttgttgg |
112 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33115748 |
cagagacaaggaaggaatgattttggtttgtttacaaaaaggtttcttcgccgccatggacttcacttgcttggaactgctatgacttggttcttgttgg |
33115847 |
T |
|
| Q |
113 |
atattgcttattatagtcagaatcttttccagaaagatattttcagtgcaattggatggattccagaagctaaaactatgagtgccctcgaagaggttta |
212 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33115848 |
atattgcttattatagtcaaaatcttttccagaaagatattttcagtgcaattggatggattccagaagctaaaactatgagtgccctcgaagaggttta |
33115947 |
T |
|
| Q |
213 |
caagattgctagagcacagacactcatagcactttgcagtactgttcctggttactggttcacagtggcactcattgatagaattggaagattt |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33115948 |
caagattgctagagcacagacactcatagcactttgcagtactgttcctggttactggttcacagtggcactcattgatagaattggaagattt |
33116041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 112 - 302
Target Start/End: Complemental strand, 30620184 - 30619994
Alignment:
| Q |
112 |
gatattgcttattatagtcagaatcttttccagaaagatattttcagtgcaattggatggattccagaagctaaaactatgagtgccctcgaagaggttt |
211 |
Q |
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|||||||| | ||| ||||||||||||||||| || ||||| |||||||||||||| |||||||| || || || |||| ||| || |||||||||| |
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| T |
30620184 |
gatattgcattttacagtcagaatcttttccaaaaggatatcttcagtgcaattggttggattccgtctgcaaagacgatgaatgcacttgaagaggttt |
30620085 |
T |
|
| Q |
212 |
acaagattgctagagcacagacactcatagcactttgcagtactgttcctggttactggttcacagtggcactcattgatagaattggaag |
302 |
Q |
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| T |
30620084 |
ataaaattgcgagggcgcaaacacttattgcattatgcagtacagttcctggttactggttcacagttgcattcattgatagaattggaag |
30619994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 100 - 275
Target Start/End: Original strand, 16184694 - 16184869
Alignment:
| Q |
100 |
tggttcttgttggatattgcttattatagtcagaatcttttccagaaagatattttcagtgcaattggatggattccagaagctaaaactatgagtgccc |
199 |
Q |
| |
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||||| |||||||||||||||| |||||||||||||||||||| || || ||||| || |||||||||||||| || || ||| |||| ||| |
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| T |
16184694 |
tggtttttgttggatattgctttctatagtcagaatcttttccaaaaggacatttttagcgcaattggatggatacctccggcaaaagaaatgaatgcaa |
16184793 |
T |
|
| Q |
200 |
tcgaagaggtttacaagattgctagagcacagacactcatagcactttgcagtactgttcctggttactggttcac |
275 |
Q |
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| | ||||||||||||||||| |||||||| ||||| || || | |||||||||||||| |||||||||||||| |
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| T |
16184794 |
ttcatgaggtttacaagattgcaagagcacaaacacttattgcgttgtgcagtactgttccgggttactggttcac |
16184869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 100 - 278
Target Start/End: Original strand, 16224084 - 16224262
Alignment:
| Q |
100 |
tggttcttgttggatattgcttattatagtcagaatcttttccagaaagatattttcagtgcaattggatggattccagaagctaaaactatgagtgccc |
199 |
Q |
| |
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||||| |||||||||||||||| |||||||||||||||||||| || || ||||| || ||||| |||||||| || || ||| |||| ||| |
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| T |
16224084 |
tggtttttgttggatattgctttctatagtcagaatcttttccaaaaggacatttttagcgcaatcggatggatccctccggcaaaagaaatgaatgcaa |
16224183 |
T |
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| Q |
200 |
tcgaagaggtttacaagattgctagagcacagacactcatagcactttgcagtactgttcctggttactggttcacagt |
278 |
Q |
| |
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| | ||||||||||||||||| |||||||| ||||| || || | |||||||||||||| ||||||||||||||||| |
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| T |
16224184 |
ttcatgaggtttacaagattgcaagagcacaaacacttattgcgttgtgcagtactgttccgggttactggttcacagt |
16224262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 97 - 278
Target Start/End: Complemental strand, 16174671 - 16174490
Alignment:
| Q |
97 |
acttggttcttgttggatattgcttattatagtcagaatcttttccagaaagatattttcagtgcaattggatggattccagaagctaaaactatgagtg |
196 |
Q |
| |
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|||||||| |||||||||||||||| |||||||||||||||||||| || || ||||| || ||||| |||||||| || || ||| |||| || |
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| T |
16174671 |
acttggtttttgttggatattgctttctatagtcagaatcttttccaaaaggacatttttagcgcaatcggatggatccctccggcaaaagaaatgaatg |
16174572 |
T |
|
| Q |
197 |
ccctcgaagaggtttacaagattgctagagcacagacactcatagcactttgcagtactgttcctggttactggttcacagt |
278 |
Q |
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| | | ||||||||||||||||| |||||||| ||||| || || | |||||||||||||| || |||||||||||||| |
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| T |
16174571 |
caattcatgaggtttacaagattgcaagagcacaaacacttattgcgttgtgcagtactgttccgggctactggttcacagt |
16174490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 250 - 302
Target Start/End: Complemental strand, 30615292 - 30615240
Alignment:
| Q |
250 |
agtactgttcctggttactggttcacagtggcactcattgatagaattggaag |
302 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
30615292 |
agtacagttcctggttactggttcacagtggcactcattgatagaatgggaag |
30615240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 97 - 157
Target Start/End: Original strand, 33109791 - 33109851
Alignment:
| Q |
97 |
acttggttcttgttggatattgcttattatagtcagaatcttttccagaaagatattttca |
157 |
Q |
| |
|
||||||||||||||||| ||||||| || |||||||||||||| || || |||||||||| |
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| T |
33109791 |
acttggttcttgttggacattgctttctacagtcagaatctttttcaaaaggatattttca |
33109851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 97 - 290
Target Start/End: Original strand, 38893873 - 38894066
Alignment:
| Q |
97 |
acttggttcttgttggatattgcttattatagtcagaatcttttccagaaagatattttcagtgcaattggatggattccagaagctaaaactatgagtg |
196 |
Q |
| |
|
|||||||||||| | ||||| || | ||| ||||| ||||| |||||||| ||||| |||||||||||||| ||||| ||| || ||||||||| || |
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| T |
38893873 |
acttggttcttgcttgatatagcattttacagtcaaaatctcttccagaaggatatcttcagtgcaattggttggataccacctgcacaaactatgaatg |
38893972 |
T |
|
| Q |
197 |
ccctcgaagaggtttacaagattgctagagcacagacactcatagcactttgcagtactgttcctggttactggttcacagtggcactcattga |
290 |
Q |
| |
|
| || || ||||||||||| || || ||||| || ||||| || || || |||||||| ||||| || |||||||| || ||||| |||||||| |
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| T |
38893973 |
cacttgaggaggtttacaaaatcgcaagagctcaaacacttattgctctatgcagtacagttccaggctactggtttacggtggctctcattga |
38894066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 97 - 306
Target Start/End: Original strand, 38884687 - 38884896
Alignment:
| Q |
97 |
acttggttcttgttggatattgcttattatagtcagaatcttttccagaaagatattttcagtgcaattggatggattccagaagctaaaactatgagtg |
196 |
Q |
| |
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|||||||||||| | ||||| || | |||||| || ||||| |||||||| ||||||||||| |||||||| ||||| ||| | |||| |||| || |
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| T |
38884687 |
acttggttcttgcttgatatagcattttatagccaaaatctcttccagaaggatattttcagcgcaattggttggataccacctccacaaaccatgaatg |
38884786 |
T |
|
| Q |
197 |
ccctcgaagaggtttacaagattgctagagcacagacactcatagcactttgcagtactgttcctggttactggttcacagtggcactcattgatagaat |
296 |
Q |
| |
|
| || || ||||||||||| |||||| |||| || ||||| || || || |||||||| ||||| ||||| ||||| || ||||| |||| || ||||| |
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| T |
38884787 |
cacttgaggaggtttacaaaattgctcgagctcaaacacttattgctctatgcagtacagttccaggttattggtttaccgtggctttcatagacagaat |
38884886 |
T |
|
| Q |
297 |
tggaagattt |
306 |
Q |
| |
|
||||||||| |
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|
| T |
38884887 |
aggaagattt |
38884896 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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