View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16379_high_2 (Length: 662)
Name: NF16379_high_2
Description: NF16379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16379_high_2 |
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Alignment Details
Target: chr6 (Bit Score: 591; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 591; E-Value: 0
Query Start/End: Original strand, 19 - 649
Target Start/End: Original strand, 34190451 - 34191081
Alignment:
| Q |
19 |
gactccaatgcactccagcgtctcacaggcaaacctatccctctgcgtttgtctgtgtacgctggaagcatgggtcaaacttgcggtatagcaaattcga |
118 |
Q |
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| T |
34190451 |
gactccaatgcactccagcgtctcacaggcaaacctatccctctgcgtttgtctgtgtacgctggaagcatgggtcgaacttgcggtatagcaaattcga |
34190550 |
T |
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| Q |
119 |
agcttttaggtcgtgttgttgttaatattgatcttaaaaactctttgtctcgttcagttatgtttcatagtggatggcttgcattgggaaaaaagaaagg |
218 |
Q |
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| T |
34190551 |
agcttttaggtcgtgttgttgttaatattgatcttaaaaactctttgtctcgttcagttatgtttcatagtggatggcttgcattgggaaaaaagaaagg |
34190650 |
T |
|
| Q |
219 |
atttgaaccgggaaagaaggattcggctcgggttcatttcgtggttcggactgaaccggatccacggttcttatttcaattcggaggcgaaccggaatgt |
318 |
Q |
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| T |
34190651 |
atttgaaccgggaaagaaggattcggctcgggttcatttcgtggttcggactgaaccggatccacggttcttatttcaattcggaggcgaaccggaatgt |
34190750 |
T |
|
| Q |
319 |
agtcccgtggtttttcagattcaagagaatattagacaaccggtttttagttgcaaatttagtgctgatcgaaattctagatcaaggtgagtttggttaa |
418 |
Q |
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| T |
34190751 |
agtcccgtggtttttcagattcaagagaatattagacaaccggtttttagttgcaaatttagtgctgatcgaaattctagatcaaggtgagtttggttaa |
34190850 |
T |
|
| Q |
419 |
tcttgttttttgcattttaatactgtttttaatgttactgtgttcacagtggattaatcttcaaaagtcgaatcaagcaatactgtagaatcggttaaac |
518 |
Q |
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| T |
34190851 |
tcttgttttttgcattttaatactgtttttaatttttctgtgttcacattggattaatcttcaaaattcgaatcaagcaatacggtagaatcggttaaac |
34190950 |
T |
|
| Q |
519 |
tataaactagagttatctatagtttagttatttggtcgtgtcatcataatcatgtccaatatatagttaaaagtgattttggaagaataactcaaaagtg |
618 |
Q |
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||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
34190951 |
tataaactaaagttatctatagtttagttatttggtcgtttcatcataatcatgtccaatatatagttaaaagtgattttggaaaaataactcaaaagtt |
34191050 |
T |
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| Q |
619 |
ttatctcttcaaagatttaatttttgttcat |
649 |
Q |
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| T |
34191051 |
ttatctcttcaaagatttaatttttgttcat |
34191081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 304 - 374
Target Start/End: Complemental strand, 43037352 - 43037282
Alignment:
| Q |
304 |
ggcgaaccggaatgtagtcccgtggtttttcagattcaagagaatattagacaaccggtttttagttgcaa |
374 |
Q |
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|||||||||||||||||||| || |||| |||||||| |||||||| | ||||||| ||||||| ||||| |
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| T |
43037352 |
ggcgaaccggaatgtagtcctgttattttccagattcaggagaatatcaaacaaccgatttttagctgcaa |
43037282 |
T |
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