View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16379_high_25 (Length: 239)
Name: NF16379_high_25
Description: NF16379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16379_high_25 |
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Alignment Details
Target: chr7 (Bit Score: 177; Significance: 2e-95; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 13 - 193
Target Start/End: Complemental strand, 43696721 - 43696541
Alignment:
| Q |
13 |
cagagagatataactccccaaatagagtaaatgaaattacatttcggacgtaatagtaacatgataagtcccagataaggttgaaatgtaggtgagctta |
112 |
Q |
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| T |
43696721 |
cagagagatataactccccaaatagagtaaatgaaattacatttcggacgtaatagtaacatgataagtcccagataaggttgaaatgtaggcgagctta |
43696622 |
T |
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| Q |
113 |
tggatttcaagggtttaggacaaatagaaaaggcttttattccactattagaggaagtatgttctcagcgtgtcaacagaa |
193 |
Q |
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| T |
43696621 |
tggatttcaagggtttaggacaaatagaaaaggcttttattccactattagaggaagtatgttctcagcgtgtcaacagaa |
43696541 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 103 - 179
Target Start/End: Complemental strand, 43709747 - 43709671
Alignment:
| Q |
103 |
ggtgagcttatggatttcaagggtttaggacaaatagaaaaggcttttattccactattagaggaagtatgttctca |
179 |
Q |
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| T |
43709747 |
ggtgagcttatggatttcatgggtttagggcaagtggaaacgtattttgttccactactagagaaagcatgttctca |
43709671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 103 - 179
Target Start/End: Original strand, 41126524 - 41126600
Alignment:
| Q |
103 |
ggtgagcttatggatttcaagggtttaggacaaatagaaaaggcttttattccactattagaggaagtatgttctca |
179 |
Q |
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| T |
41126524 |
ggtgtgcttatggatttcaagggtttaggacaagtggaaaaagcttttgttctgctactagaggaagcatgctctca |
41126600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 103 - 179
Target Start/End: Complemental strand, 41126733 - 41126657
Alignment:
| Q |
103 |
ggtgagcttatggatttcaagggtttaggacaaatagaaaaggcttttattccactattagaggaagtatgttctca |
179 |
Q |
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| T |
41126733 |
ggtgtgcttatggatttcaagggtttaggacaagtggataaagcttttgttccgctactagaggaagcatgctctca |
41126657 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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