View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16379_high_6 (Length: 525)
Name: NF16379_high_6
Description: NF16379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16379_high_6 |
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| [»] scaffold0429 (1 HSPs) |
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| [»] scaffold0014 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 411; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 46 - 512
Target Start/End: Original strand, 1446671 - 1447134
Alignment:
| Q |
46 |
ttgaaatggaataagaaaattgtgagaataagaaacgaacctcttcttcaacattgaagtaaattaatgatatttctcaaagataaataacaaatgagaa |
145 |
Q |
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| T |
1446671 |
ttgaaatggaataagaaaattgtgagaataagaaacgaacctcttcttcaacattgaagtaaattaatgatattgctcaaagataaataacaaatgagaa |
1446770 |
T |
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| Q |
146 |
cgattcaaactgagttatgagatttgcagtttcttcaaactgatggtatccaagttcgtcaagttacagtgtgaaatcacgttgatttgttaacaaaacc |
245 |
Q |
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| T |
1446771 |
cgattcaaacggagttatgagatttgcagtttcttcaaactgatggtatccaagttcgtcaagttacagtgtgaaatcacgttgatttgttaacaaaacc |
1446870 |
T |
|
| Q |
246 |
caaaggctaagcatatattatgaagttctcatagcatattacctaagaaaatacctgttaatcatagcaagaacactaggaacaaatacccttgttaatg |
345 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1446871 |
caaaggctaagc--atattatgaagttctcatagcatattacctaagaaaatacctgttaatcatagcaagaacactaggaacaaatacccttgttaatg |
1446968 |
T |
|
| Q |
346 |
gcttagtagcatacgtcttactttatcaatgagcttcattgtcaatcatatttttatagaaggaaatctttgtgcaattaagttggaaagtttaggtctt |
445 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
1446969 |
gcttagtagcatacgtcttactttatcaatgagcttcattgttaatcatatttttatagaaggaaatctttatgcaattaagttggaaagtttaggtctt |
1447068 |
T |
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| Q |
446 |
aattcnnnnnnnttatttggtttgatcatttttataggaaagtttagggctcccttattttcatctc |
512 |
Q |
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| T |
1447069 |
aattcaaaaaaattatttggtttgatcatttttataggaaagttta-ggctcccttattttcatctc |
1447134 |
T |
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Back To:
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Target: scaffold0429 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0429
Description:
Target: scaffold0429; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 46 - 108
Target Start/End: Complemental strand, 5034 - 4972
Alignment:
| Q |
46 |
ttgaaatggaataagaaaattgtgagaataagaaacgaacctcttcttcaacattgaagtaaa |
108 |
Q |
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| T |
5034 |
ttgaaatgcaatgagaaaattgtgagagtaagaaacgaacctcttgttcaacattgaagtaaa |
4972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0014 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0014
Description:
Target: scaffold0014; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 46 - 108
Target Start/End: Original strand, 122614 - 122676
Alignment:
| Q |
46 |
ttgaaatggaataagaaaattgtgagaataagaaacgaacctcttcttcaacattgaagtaaa |
108 |
Q |
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| T |
122614 |
ttgaaatggaatgagaaaactgtgagggtaagaaacgaacctgttcttcaacattgaagtaaa |
122676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 52 - 101
Target Start/End: Complemental strand, 3641890 - 3641841
Alignment:
| Q |
52 |
tggaataagaaaattgtgagaataagaaacgaacctcttcttcaacattg |
101 |
Q |
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||||||||||||||||| ||| ||| ||| |||||| ||||||||||||| |
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| T |
3641890 |
tggaataagaaaattgttagagtaataaatgaacctgttcttcaacattg |
3641841 |
T |
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