View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16379_low_11 (Length: 426)
Name: NF16379_low_11
Description: NF16379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16379_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 320; Significance: 1e-180; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 20 - 409
Target Start/End: Original strand, 17885292 - 17885676
Alignment:
| Q |
20 |
cttagctcaccggaggatgctaaaaatgttgctgattacctctttactaactttcttagtggtcaatttggtccacttggaagtgttaccttagatggta |
119 |
Q |
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||||||||||| || |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17885292 |
cttagctcaccagacgatgctaaaaatgttgctgattacctctatactaactttcttagtggtcaatttggtccacttggaagtgttaccttagatggta |
17885391 |
T |
|
| Q |
120 |
ttgattttgacattgaaggaggtagcaatctttactgggatgaccttgctagggaacttgacaacctaagacaacaaaacaggtaatattttttg-atga |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| |||||||||||||||||||||| ||||||| | || |
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| T |
17885392 |
ttgattttgacattgaaggaggtagcaatctttactgggatgaccttgctaggaatcttgacaatctaagacaacaaaacaggtaatgttttttgaagga |
17885491 |
T |
|
| Q |
219 |
caagttttagcatgttagtactagtaatatgtctgtctcatattaagtatttttaagattatgtacatttcttaagagaatcgttgagtgtgtacaaaat |
318 |
Q |
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||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17885492 |
gaagttttagca------tactagtaatttgtctgtctcatattaagtatttttaagattatgtacatttcttaagagaatcgttgagtgtgtacaaaat |
17885585 |
T |
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| Q |
319 |
aagataaaatgagttaaattctactaattttgttttattaatagtggtgaatagaatagttagtgatttgaaataaagggtgccaatttaa |
409 |
Q |
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| T |
17885586 |
aagataaaatgagttaaattctactaattttgttttattaatagtggtgaatagaatagttagtgatttgaaataaagggtgccaatttaa |
17885676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 20 - 309
Target Start/End: Original strand, 17844940 - 17845230
Alignment:
| Q |
20 |
cttagctcaccggaggatgctaaaaatgttgctgattacctctttactaactttcttagtggtcaatttggtccacttggaagtgttaccttagatggta |
119 |
Q |
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||||||||||| || |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17844940 |
cttagctcaccagacgatgctaaaaatgttgctgattacctctatactaactttcttagtggtcaatttggtccacttggaagtgttaccttagatggta |
17845039 |
T |
|
| Q |
120 |
ttgattttgacattgaaggaggtagcaatctttactgggatgaccttgctagggaacttgacaacctaagacaacaaaacaggtaatattttttg-atga |
218 |
Q |
| |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||| | |||||||| |||||||||||||||||||||| ||||||| |||| |
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| T |
17845040 |
ttgattttgacattgaaggaggtagcgatctttactgggatgaccttgctaggaatcttgacaatctaagacaacaaaacaggtaatgttttttgaatga |
17845139 |
T |
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| Q |
219 |
caagttttagcatgttagtactagtaatatgtctgtctcatattaagtatttttaagattatgtacatttcttaagagaatcgttgagtgt |
309 |
Q |
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|||||||||||||||| |||||||| | |||| ||||||||||| |||||||||||||||||| ||||||||||||| ||| |||||||| |
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| T |
17845140 |
gaagttttagcatgttaatactagtagtttgtccgtctcatattatgtatttttaagattatgtccatttcttaagagcatcattgagtgt |
17845230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 20 - 231
Target Start/End: Complemental strand, 17821077 - 17820862
Alignment:
| Q |
20 |
cttagctcaccggaggatgctaaaaatgttgctgattacctctttactaactttcttagtggtcaatttggtccacttggaagtgttaccttagatggta |
119 |
Q |
| |
|
|||| |||| |||| || ||||||||| || |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17821077 |
cttaactcatcggaagaagctaaaaatctttctgattacctctatactaactttcttagtggtcaatttggtccacttggaagtgttaccttagatggta |
17820978 |
T |
|
| Q |
120 |
ttgattttgacattgaagga---ggtagcaatctttactgggatgaccttgctagggaacttgacaacctaagacaacaaaacaggtaatattttttg-a |
215 |
Q |
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|||||||||||||||||||| | || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
17820977 |
ttgattttgacattgaaggagctgctacaaatctttactgggatgaccttgctagggaacttgacaacctaagacaacaaaacaggtaatattttttgaa |
17820878 |
T |
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| Q |
216 |
tgacaagttttagcat |
231 |
Q |
| |
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||| |||||||||||| |
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| T |
17820877 |
tgaaaagttttagcat |
17820862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 20 - 240
Target Start/End: Complemental strand, 17861254 - 17861034
Alignment:
| Q |
20 |
cttagctcaccggaggatgctaaaaatgttgctgattacctctttactaactttcttagtggtcaatttggtccacttggaagtgttaccttagatggta |
119 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||| || | |||| || ||||||||||||| ||||||||||||||||||||||||||||| | |
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| T |
17861254 |
cttagctcaccagaggatgctaaaaatgttgctgattatctaaatgctaagttccttagtggtcaatccggtccacttggaagtgttaccttagatggaa |
17861155 |
T |
|
| Q |
120 |
ttgattttgacattgaaggaggtagcaatctttactgggatgaccttgctagggaacttgacaacctaagacaacaaaacaggtaatattttttga-tga |
218 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| |
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| T |
17861154 |
ttgattttgacattgaaggaggtacaaatctttactgggatgaccttgctagggaacttgacaacctaagacaacaaaacaggta-tattttttgaatga |
17861056 |
T |
|
| Q |
219 |
caagttttagcatgttagtact |
240 |
Q |
| |
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|||||||||||||| ||||||| |
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| T |
17861055 |
caagttttagcatgatagtact |
17861034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 283 - 420
Target Start/End: Complemental strand, 17860892 - 17860754
Alignment:
| Q |
283 |
acatttcttaagagaatcgttgagtgtgtacaaaataagataaaatgagttaaattctactaattttgttttattaatagtgg---tgaatagaatagtt |
379 |
Q |
| |
|
|||||||||||||||||| |||| ||| |||||||||||||||||||| | |||| || || |||||||||||||||||||| | |||||| ||||| |
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| T |
17860892 |
acatttcttaagagaatcattgaatgt--acaaaataagataaaatgagcttaattttattagttttgttttattaatagtggttattaatagagtagtt |
17860795 |
T |
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| Q |
380 |
agtgatttgaaataaagggtgccaatttaattgatgatgtc |
420 |
Q |
| |
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|||| |||||||||| ||||||||||||| ||||||||||| |
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| T |
17860794 |
agtggtttgaaataaggggtgccaatttagttgatgatgtc |
17860754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 20 - 133
Target Start/End: Original strand, 17904689 - 17904802
Alignment:
| Q |
20 |
cttagctcaccggaggatgctaaaaatgttgctgattacctctttactaactttcttagtggtcaatttggtccacttggaagtgttaccttagatggta |
119 |
Q |
| |
|
||||||||||| || ||||||||||||||||||||||| || | |||| || ||||||||||||| |||||||||||||||||||||||||||||| | |
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| T |
17904689 |
cttagctcaccagatgatgctaaaaatgttgctgattatctaaatgctaagttccttagtggtcaatctggtccacttggaagtgttaccttagatggaa |
17904788 |
T |
|
| Q |
120 |
ttgattttgacatt |
133 |
Q |
| |
|
||||||||| |||| |
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|
| T |
17904789 |
ttgattttgccatt |
17904802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 283 - 420
Target Start/End: Complemental strand, 17820722 - 17820588
Alignment:
| Q |
283 |
acatttcttaagagaatcgttgagtgtgtacaaaataagataaaatgagttaaattctactaattttgttttattaatagtggtgaatagaatagttagt |
382 |
Q |
| |
|
||||||||||||| |||| |||| ||| |||||||||||||||||||| | |||| || || | ||||||||||||||||||| |||||| || ||||| |
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| T |
17820722 |
acatttcttaagataatcattgaatgt--acaaaataagataaaatgaggttaattttattagtcttgttttattaatagtggttaatagagta-ttagt |
17820626 |
T |
|
| Q |
383 |
gatttgaaataaagggtgccaatttaattgatgatgtc |
420 |
Q |
| |
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| |||||||||| ||||||||||||| ||||||||||| |
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| T |
17820625 |
ggtttgaaataaggggtgccaatttagttgatgatgtc |
17820588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 32 - 142
Target Start/End: Original strand, 17914718 - 17914828
Alignment:
| Q |
32 |
gaggatgctaaaaatgttgctgattacctctttactaactttcttagtggtcaatttggtccacttggaagtgttaccttagatggtattgattttgaca |
131 |
Q |
| |
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||||||||||||||||| ||| |||| || ||||||||||| |||| |||||||||||||||||||||||||||||| ||| |||||||| ||| || | |
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| T |
17914718 |
gaggatgctaaaaatgtagctaattatctatttactaacttccttaatggtcaatttggtccacttggaagtgttactttaaatggtattagtttggata |
17914817 |
T |
|
| Q |
132 |
ttgaaggaggt |
142 |
Q |
| |
|
|| |||||||| |
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|
| T |
17914818 |
ttcaaggaggt |
17914828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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