View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16379_low_20 (Length: 271)
Name: NF16379_low_20
Description: NF16379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16379_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 34 - 240
Target Start/End: Original strand, 31338112 - 31338318
Alignment:
| Q |
34 |
gatcatactaaccgagtccaatggcttcctttcctttcatgatacgtagacgcttgcatgaatcaataaacatcctgtcgacacaaagaaaataaaaatg |
133 |
Q |
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| T |
31338112 |
gatcatactaaccgagtccaatggcttcctttcctttcatgatacgtagacgcttgcatgaatcaataaacatcctgtcgacacagagaaaataaaaatg |
31338211 |
T |
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| Q |
134 |
ttttcgttagctatatattgtggttgtggtttctctgtctcatcatggatcgatattgttctataaattaacaataaatgtgttcttttgtaccaaaaaa |
233 |
Q |
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| T |
31338212 |
ttttcgttagctatatattgtggttgtggtttctctgtctcatcatggatcgatattattctataaattaacaataaatgtgttcttttgtaccaaaaaa |
31338311 |
T |
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| Q |
234 |
tataata |
240 |
Q |
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||||||| |
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| T |
31338312 |
tataata |
31338318 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 38 - 110
Target Start/End: Complemental strand, 38532460 - 38532388
Alignment:
| Q |
38 |
atactaaccgagtccaatggcttcctttcctttcatgatacgtagacgcttgcatgaatcaataaacatcctg |
110 |
Q |
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||||||||| | ||||| || |||||||||||||||||||| | ||| |||||||| |||| |||||||||| |
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| T |
38532460 |
atactaacctataccaatagcctcctttcctttcatgatacgcaaacgtttgcatgattcaacaaacatcctg |
38532388 |
T |
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