View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16379_low_22 (Length: 263)
Name: NF16379_low_22
Description: NF16379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16379_low_22 |
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Alignment Details
Target: chr2 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 14177898 - 14177655
Alignment:
| Q |
1 |
cacaacacaatgttcatactttgtatcagtttgttcccaaaatatctactgggtatgagtgaatagtgtctctccacgcagtggtggtatcaggcttcac |
100 |
Q |
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| T |
14177898 |
cacaacacaatgttcatactttgtatcagtttgttcccaaaatatctactgggtatgagtgaatagtgtctctccacgcagtggtggtatcaggcttcac |
14177799 |
T |
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| Q |
101 |
gtcacctaaacacttccacactgcactgttacacttgaatccacttccaaaggcaatttgccacaccctatctccacatttcatcctcccttttgcttca |
200 |
Q |
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| T |
14177798 |
gtcacctaaacatttccacactgcactgttacacttgaatccacttccaaaggcaatttgccacaccctatctccacatttcatcctcccttttgcttca |
14177699 |
T |
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| Q |
201 |
atatatgacaactcataccaaattgaagaagatgaagtgtttcc |
244 |
Q |
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| T |
14177698 |
atgtatgacaactcataccaaattgaagaagatgaagtgtttcc |
14177655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 111 - 163
Target Start/End: Complemental strand, 794377 - 794325
Alignment:
| Q |
111 |
cacttccacactgcactgttacacttgaatccacttccaaaggcaatttgcca |
163 |
Q |
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| T |
794377 |
cacttccagacagcactgttacacttgaaaccacttccaaagccaatttgcca |
794325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 114 - 205
Target Start/End: Original strand, 23271370 - 23271461
Alignment:
| Q |
114 |
ttccacactgcactgttacacttgaatccacttccaaaggcaatttgccacaccctatctccacatttcatcctcccttttgcttcaatata |
205 |
Q |
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| T |
23271370 |
ttccacacagcactattgcatttaaatccacttccaaaagctatttgccatactctatcacctctcttcatccttccttttgattcaatata |
23271461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 143
Target Start/End: Complemental strand, 46572910 - 46572880
Alignment:
| Q |
113 |
cttccacactgcactgttacacttgaatcca |
143 |
Q |
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| T |
46572910 |
cttccacactgcactgttacacttgaatcca |
46572880 |
T |
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