View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16379_low_24 (Length: 253)

Name: NF16379_low_24
Description: NF16379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16379_low_24
NF16379_low_24
[»] chr3 (2 HSPs)
chr3 (150-237)||(798211-798298)
chr3 (12-92)||(798356-798440)
[»] chr1 (1 HSPs)
chr1 (169-215)||(14527408-14527454)


Alignment Details
Target: chr3 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 150 - 237
Target Start/End: Complemental strand, 798298 - 798211
Alignment:
Q  150 ataacacaattggacacttattgttggtatagttgtttgactactgtttacacgaggcaaaacactagaaagtcagatgctttaattg 237  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||    
T  798298 ataacacaattggacacttattgttggtatagttgtttgactactgtttacacgtggcaaaacaccagaaagtcagatgctttaattg 798211  T

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Target: chr3; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 12 - 92
Target Start/End: Complemental strand, 798440 - 798356
Alignment:
Q  12 cagagagaacatgtatatatttgtctctattttgtaaattttgctaggcaagcctaagtc----atctagcgagccaaacttaac 92  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||    
T  798440 cagagagaacatgtatatatttgtctctattttgtaaattttgctaggcaagcctaagtcatcgatctagcgagccaaacttaac 798356  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 215
Target Start/End: Original strand, 14527408 - 14527454
Alignment:
Q  169 attgttggtatagttgtttgactactgtttacacgaggcaaaacact 215  Q
    ||||||||||||||||||||| |||||| || |||| ||||||||||    
T  14527408 attgttggtatagttgtttgattactgtgtatacgatgcaaaacact 14527454  T

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