View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16379_low_27 (Length: 238)
Name: NF16379_low_27
Description: NF16379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16379_low_27 |
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Alignment Details
Target: chr3 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 13 - 221
Target Start/End: Complemental strand, 39270382 - 39270174
Alignment:
| Q |
13 |
ataattctaaattaatttgtttcttgttaattgaggagtagaggagtttacaacaaagaagaagaggatattattattaaatataaagagaaaatgcaat |
112 |
Q |
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| T |
39270382 |
ataattctcaattaatttgtttcttgttaattgaggagtagaggagtttacaacaaagaagaagaggatattattattaaatataaagagaaaatgcaat |
39270283 |
T |
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| Q |
113 |
gcaacattaatagccaaacatatattacatcaacatttaattctaattatttattatggcaaaaaacatgaaactcatatagatacattattattatggt |
212 |
Q |
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| T |
39270282 |
gcaacattaatagccaaacatatattacatcaacatttaattctaattatttattatggcaaaaaacatgaaactcatatagatacattattattatggt |
39270183 |
T |
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| Q |
213 |
cacatatct |
221 |
Q |
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||||||||| |
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| T |
39270182 |
cacatatct |
39270174 |
T |
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