View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16379_low_28 (Length: 234)
Name: NF16379_low_28
Description: NF16379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16379_low_28 |
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Alignment Details
Target: chr7 (Bit Score: 164; Significance: 9e-88; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 18 - 217
Target Start/End: Original strand, 24693958 - 24694157
Alignment:
| Q |
18 |
accatcattaaatgataaaccaaaaatagactttgtgaaagcattgaagtcaatgggtgatatttattttactgatggtaagacctcacttcagttaagt |
117 |
Q |
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| T |
24693958 |
accatcattaaatgataaaccaaatatatactttgtgaaagcattgaagtcaatgggtgataaatattttactgatggtaagacctcacttcagttaagt |
24694057 |
T |
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| Q |
118 |
tcaactgaggaagaagacatggaacttgtttgctcactcaacaattttttaactgctagttgtaattatcttctaagacccgttattcctattggaccta |
217 |
Q |
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| T |
24694058 |
tcaactgaggaagaagacatggaacttgtttgctcactcaacaattttttaactcctaggtgtaatcatctactaagacccgttattcccattggaccta |
24694157 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 20 - 217
Target Start/End: Complemental strand, 24479133 - 24478939
Alignment:
| Q |
20 |
catcattaaatgataaaccaaaaatagactttgtgaaagcattgaagtcaatgggtgatatttattttactgatggtaagacctcacttcagttaagttc |
119 |
Q |
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|||||||||| ||||||||||||||||||||||| ||||||||||||||| ||| ||||| || |||| | ||||||||||||||||| |||||| || |
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| T |
24479133 |
catcattaaaagataaaccaaaaatagactttgtaaaagcattgaagtcagtggatgatagagatcttaccggtggtaagacctcacttccgttaagctc |
24479034 |
T |
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| Q |
120 |
aactgaggaagaagacatggaacttgtttgctcactcaacaattttttaactgctagttgtaattatcttctaagacccgttattcctattggaccta |
217 |
Q |
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| T |
24479033 |
aactgagg---aagacatggaacttgttcgatcattcgacaattttttaactgctagatgtaatcatattccaagacctattattcccattggaccta |
24478939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 18 - 217
Target Start/End: Complemental strand, 41369645 - 41369449
Alignment:
| Q |
18 |
accatcattaaatgataaaccaaaaatagactttgtgaaagcattgaagtcaatgggtgatatttattttactgatggtaagacctcacttcagttaagt |
117 |
Q |
| |
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|||||||||||||||||||| |||||| ||||||||| ||||||| || | ||||| ||||| || |||| ||||| | |||||||||| ||||||| |
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| T |
41369645 |
accatcattaaatgataaacaaaaaattgactttgtggaagcattaaacttaatggatgatagagatcttaccaatggtgaaacctcacttccgttaagt |
41369546 |
T |
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| Q |
118 |
tcaactgaggaagaagacatggaacttgtttgctcactcaacaattttttaactgctagttgtaattatcttctaagacccgttattcctattggaccta |
217 |
Q |
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|||||||||||||| |||||| |||||| |||||| ||||||||||||| |||| || |||| |||||| |||||| ||||||| |||||||||| |
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| T |
41369545 |
tcaactgaggaaga---catggatcttgttcgctcacgcaacaattttttacctgccagggataatcatcttccaagaccaattattcccattggaccta |
41369449 |
T |
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