View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16379_low_29 (Length: 227)
Name: NF16379_low_29
Description: NF16379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16379_low_29 |
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Alignment Details
Target: chr3 (Bit Score: 109; Significance: 6e-55; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 23 - 171
Target Start/End: Complemental strand, 45637887 - 45637739
Alignment:
| Q |
23 |
ttgaatatcagtgttttgcactctccctgattattctttattgaatcataatttgaatacttcagctcattgcaaaataattttctaatgattcagaatg |
122 |
Q |
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| T |
45637887 |
ttgaatatcagtgttttgcactcttcctgattattctttattgagtcatgatttgaatgcttcatttcattgcaaaataattttctaatgattcggaatg |
45637788 |
T |
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| Q |
123 |
cattaagtttatggtaagtagtcttgactaccctattgcacaccctagc |
171 |
Q |
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| T |
45637787 |
cataaagtttatgttaagtagtcttgactaccccattgcacaccctagc |
45637739 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 71; Significance: 3e-32; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 5 - 107
Target Start/End: Complemental strand, 11648829 - 11648727
Alignment:
| Q |
5 |
ctaacaaggtaaatccaattgaatatcagtgttttgcactctccctgattattctttattgaatcataatttgaatacttcagctcattgcaaaataatt |
104 |
Q |
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| T |
11648829 |
ctaacaaggtaaatccaattgaatatcagtggtttgcactctccatgattattcttcattgaatcatgatttgaatgcttcattttattgcaaaataatt |
11648730 |
T |
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| Q |
105 |
ttc |
107 |
Q |
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||| |
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| T |
11648729 |
ttc |
11648727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 176 - 227
Target Start/End: Complemental strand, 11648120 - 11648069
Alignment:
| Q |
176 |
agtttactataatgaattgaagcgtttttacaaatatattcattcaattaat |
227 |
Q |
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| T |
11648120 |
agtttactataatgaattgaaatgtttttacaaatatattcattcaattaat |
11648069 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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