View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16379_low_3 (Length: 570)
Name: NF16379_low_3
Description: NF16379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16379_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 374; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 171 - 552
Target Start/End: Complemental strand, 38936131 - 38935750
Alignment:
| Q |
171 |
tgaatcattgtcattgaacactaatatcaaggactttggaataagtagtagccttaggaatggttatgtaaagaacaccatccttaacctcagccttaat |
270 |
Q |
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| T |
38936131 |
tgaaccattgtcattgaacactaatatcaaggactttggaataagtagtagccttaggaatggttatgtaaagaacaccatccttaacctcagccttaat |
38936032 |
T |
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| Q |
271 |
attctcaaactgcacattctctggcaaagcaattctgctactatacctaccatagctcttagaccattcttcatcttcatcattcttcttcttaggtgct |
370 |
Q |
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| T |
38936031 |
attctcaaactgcacattctctggcaaagcaattctgctactatacctaccatagctcttagaccattcttcatcttcatcattcttcttcttaggtgct |
38935932 |
T |
|
| Q |
371 |
ttctcagctttcacaaccagcatcttttcttccacccaaaccttaacatcctctttgttcataccaggcatatcaaacctcatcttatattcactttctc |
470 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
38935931 |
ttctcagctttcacaaccagcatcttttcttccacccaaaccttaacatcctctttgttcataccaggcatatcaaacctcatcttgtattcactttctc |
38935832 |
T |
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| Q |
471 |
cttctttaatctcccatggtgttcttcccctccttctatacccgcctactccttcaatcggcagcggcgatgaaggccactc |
552 |
Q |
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| T |
38935831 |
cttctttaatctcccatggtgttcttcccctccttctatacccgcctactccttcaatcggcagcggcgatgaaggccactc |
38935750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 9 - 72
Target Start/End: Complemental strand, 38936293 - 38936230
Alignment:
| Q |
9 |
agcacagacagctgcgccataacacaagtgacttccctccataatagagaggcttcctcacaac |
72 |
Q |
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| T |
38936293 |
agcacagacagctgcgccataacacaagtgacttccctccataatagagaggcttcctcacaac |
38936230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 377 - 441
Target Start/End: Complemental strand, 20878882 - 20878818
Alignment:
| Q |
377 |
gctttcacaaccagcatcttttcttccacccaaaccttaacatcctctttgttcataccaggcat |
441 |
Q |
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|||||||| ||||||||||| ||||| | ||| ||||||||||| | |||||||||||||||||| |
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| T |
20878882 |
gctttcactaccagcatcttctcttcaatccacaccttaacatcttttttgttcataccaggcat |
20878818 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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