View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16379_low_5 (Length: 532)
Name: NF16379_low_5
Description: NF16379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16379_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 459; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 459; E-Value: 0
Query Start/End: Original strand, 14 - 525
Target Start/End: Original strand, 41129232 - 41129742
Alignment:
| Q |
14 |
tcaacaactttattaatccgtcgatttagtgcatgaactaaagaaatatatctaaaaattagccaaactcaatggtaactattggatttgcaaggaatca |
113 |
Q |
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| T |
41129232 |
tcaacaactttattaatccgtcgatttagtgcatgaactaaagaaatatatctaaaaattagccaaactcaatggtaactattggatttgcaaggaatca |
41129331 |
T |
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| Q |
114 |
taccactttgaccctttgtcactaggttccagttgacaacccttggctctactgcactgagaagctccaggaagaagagtccacttgacaagctcttatc |
213 |
Q |
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| T |
41129332 |
taccactttgaccctttgtcactaggttccagttgacaacccttggctctactgcactgagaagctccaggaagaagagtccacttgacaagctcttatc |
41129431 |
T |
|
| Q |
214 |
ctgtgcacaaaattgcatccaaaatagtgtaactaataaatcattgttttagtctactgttatcgtgcatttaacgggaaataaaccatannnnnnncaa |
313 |
Q |
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| T |
41129432 |
ctgtacacaaaattgcatccaaaatagtgtaactaataaatcattgttttagtctactgttatcgtgcatttaacaggaaataaaccatatttttttc-a |
41129530 |
T |
|
| Q |
314 |
aaaaccttgaaactctgaatgcgagacgttcttccaatgctattcacttttctgtttgcccatttaagaatatcagcatcacttatctcctttccttggg |
413 |
Q |
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| T |
41129531 |
aaaaccttgaaactctgaatgcgagacgttcttccaatgctattcacttttctgtttgcccatttaagaatatcagcatcacttatctcctttccttggg |
41129630 |
T |
|
| Q |
414 |
aatgagatctcaaatttctcaacaattgaagcattgtgaatctcatcaactgccacaataaagctgaaaaatagaacaaatcttcttagattatgacaac |
513 |
Q |
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| T |
41129631 |
aatgagatctcaaatttctcaacagttgaagcattgtgaatctcatcaactgccacaataaagctgaaaaatagaccaaatcttcttagattatgacaac |
41129730 |
T |
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| Q |
514 |
aaagttcatctc |
525 |
Q |
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| T |
41129731 |
aaaattcgtctc |
41129742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 356 - 479
Target Start/End: Complemental strand, 42971210 - 42971087
Alignment:
| Q |
356 |
ttcacttttctgtttgcccatttaagaatatcagcatcacttatctcctttccttgggaatgagatctcaaatttctcaacaattgaagcattgtgaatc |
455 |
Q |
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|||||||| |||| ||||| || || |||||||||||| | ||||| || |||||||| || |||||||| ||||||| | ||||||||| || |||| |
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| T |
42971210 |
ttcactttgttgttcgcccagtttagtatatcagcatcagtaatctctttaccttgggagtgtgatctcaagtttctcagaagttgaagcatggtaaatc |
42971111 |
T |
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| Q |
456 |
tcatcaactgccacaataaagctg |
479 |
Q |
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| T |
42971110 |
tcataagctgccacaaaaaagctg |
42971087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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