View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16379_low_7 (Length: 509)
Name: NF16379_low_7
Description: NF16379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16379_low_7 |
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Alignment Details
Target: chr6 (Bit Score: 434; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 19 - 496
Target Start/End: Complemental strand, 32346345 - 32345868
Alignment:
| Q |
19 |
ttctactagctggataaagatgattattgacgttatctaattagtacttatgtcttacgcacttgaacacacatttcatagataaattgttcctttactt |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| || |||||||||||||| |
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| T |
32346345 |
ttctactagctggataaagatgattattgacgttatctaattagtacttaggtcttacgcacttgaacacacattttatagacaatttgttcctttactt |
32346246 |
T |
|
| Q |
119 |
tgttagaatcaaaacatcaattgcgaggtattgtttcttaatcaacttggttcttacagtggtaccataatttcgtttatttctcttaagataacacaaa |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32346245 |
tgttagaatcaaaacatcaattgcgaggtattgtttcttaaccaacttgattcttacagtggtaccataatttcgtttatttctcttaagataacacaaa |
32346146 |
T |
|
| Q |
219 |
aataaaatgtatactttaggatgtctacgtcagccttgttgttccacctttacctcattgaacctcgaaacatcttttgccttcttgaatacttgcctcc |
318 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32346145 |
aataaaatgtatactttaggatgtttacgtcagccttgttgttccacctttacctcattgaacctcgaaacatcttttgccttcttgaatacttgcctcc |
32346046 |
T |
|
| Q |
319 |
aactacactgagccttttaagtagctccataacttatcaccattacctcttcaacctctggattgattaatttatgtcctcttgaagatcttcttgcctt |
418 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
32346045 |
aactacactgagccttttaagtagctccataacttatcaccataacctcttcaacctctggattgattaatttatgtcctcttgaagatcttcttgtctt |
32345946 |
T |
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| Q |
419 |
caattacccttggtcttttaggaatcccacaagtcgttccataccttcttcaacccctgaaatgtgcttctctgtcct |
496 |
Q |
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| T |
32345945 |
caattacccttggtcttttaggaatcccacaagtcgtttcataccttcttcaactcctgaaatgtgcttctctgtcct |
32345868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 392 - 472
Target Start/End: Original strand, 10456153 - 10456234
Alignment:
| Q |
392 |
atgtcctcttgaagatcttcttgccttcaattacccttggtcttttagg-aatcccacaagtcgttccataccttcttcaac |
472 |
Q |
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||||| ||||||| |||| ||| | | |||| ||||||||||||||||| |||||||||||| || |||||| ||||||||| |
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| T |
10456153 |
atgtcttcttgaatatctccttacatccaatcacccttggtcttttaggtaatcccacaagttgtgccatacattcttcaac |
10456234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 394 - 475
Target Start/End: Original strand, 37048262 - 37048344
Alignment:
| Q |
394 |
gtcctcttgaagatcttcttgccttcaattacccttggtcttttagg-aatcccacaagtcgttccataccttcttcaacccc |
475 |
Q |
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| T |
37048262 |
gtcctcttgaagattctcttgcctccaattacccttggtcttttaggtaatcccataagccattccataccttcttcaacccc |
37048344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 398 - 471
Target Start/End: Original strand, 29797096 - 29797170
Alignment:
| Q |
398 |
tcttgaagatcttcttgccttcaattacccttggtcttttagg-aatcccacaagtcgttccataccttcttcaa |
471 |
Q |
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|||||||||| | ||||| | |||||||| ||||||||||||| ||||||||||||| |||||||| ||| |||| |
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| T |
29797096 |
tcttgaagatttccttgcatgcaattaccattggtcttttaggtaatcccacaagtcattccatacattcctcaa |
29797170 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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