View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16379_low_8 (Length: 469)
Name: NF16379_low_8
Description: NF16379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16379_low_8 |
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| [»] scaffold0262 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 367; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 12 - 449
Target Start/End: Complemental strand, 9526915 - 9526480
Alignment:
| Q |
12 |
atgaagaaattaggttaaaaagagagagaatacaccttatatgcacaacaaattctcataagaagattagtctgtgtttagatacctcatagaagtacaa |
111 |
Q |
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| T |
9526915 |
atgaagaaattaggttaaaaagaaaga--atacaccttatatgcacaacaaattctcataaggagattagtctgtgtttagatacctcatagaagtacaa |
9526818 |
T |
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| Q |
112 |
atataaaaagtataccgataacatttgatcatttaccaatgacatgttattgacatttaatcttttaagtatgtggtcaaatgttcgatacttaggttta |
211 |
Q |
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| T |
9526817 |
atataaaaagtataccgataacatttgatcatttaccaatgacatattattgacatttaatcttttaagtatgtagtcaaatgttcgatacttaagttta |
9526718 |
T |
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| Q |
212 |
taaagaaccaaaaatgttgggagagatcggcatcttaaataaatatcagttatatcgtagaattagtctctgtagttgtatacggaatctgccccggcta |
311 |
Q |
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| T |
9526717 |
taaagaaccaaaaatgttgggagagatcggcatcttaaataaatatcagttatatcgtagaattagtctctgtagttgtatacggaatctgccccggtta |
9526618 |
T |
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| Q |
312 |
aatcaaaaaataacccctgatcatttaagtgtagactccagataaattcttttgacatattagatatacatgtaaattttgttgctgatataggtacagg |
411 |
Q |
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| T |
9526617 |
aatcaaaaaataacccctgatcatttatgtgtatactgcagataaattcttttgacatatgatatatacatgtaaattatgttgttgatataggtacaga |
9526518 |
T |
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| Q |
412 |
gctgttacaagtgcatactatagaggtgcattaggagc |
449 |
Q |
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| T |
9526517 |
gctgtaacaagtgcatactatagaggtgcattaggagc |
9526480 |
T |
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Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 399 - 453
Target Start/End: Original strand, 48932172 - 48932226
Alignment:
| Q |
399 |
atataggtacagggctgttacaagtgcatactatagaggtgcattaggagccatg |
453 |
Q |
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| T |
48932172 |
atataggtacagagcggttacaagtgcatactacagaggagcattaggggccatg |
48932226 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0262 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0262
Description:
Target: scaffold0262; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 400 - 441
Target Start/End: Original strand, 14388 - 14429
Alignment:
| Q |
400 |
tataggtacagggctgttacaagtgcatactatagaggtgca |
441 |
Q |
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| T |
14388 |
tataggtacagggcagttactagtgcatactatcgaggtgca |
14429 |
T |
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