View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1637_low_4 (Length: 456)
Name: NF1637_low_4
Description: NF1637
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1637_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 383; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 17 - 446
Target Start/End: Original strand, 31158042 - 31158475
Alignment:
| Q |
17 |
atgatcgacttgtttttattatatctattttattcggtcttgtaatttattttatttccttcttcaagactct--aaatttgttttagaaggggtactga |
114 |
Q |
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| T |
31158042 |
atgatcgacttgtttttattatatctattttattcggtcttgtaatttattttatttccttcttcaagactctttaaatttgttttagtaggggtactga |
31158141 |
T |
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| Q |
115 |
gatgg-aaaaaaggttcatcaagttatgtgtgaagtattaagtgtgataagagatttgactgttcgtagtttatgtataattcatactctattgttagga |
213 |
Q |
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| T |
31158142 |
gatgggaaaaaaggttcatcaagttatgtgtgatgtattaagtgtgataagagatttgactgttcgtagtttatgtataatgcatactctattgttagga |
31158241 |
T |
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| Q |
214 |
aaattatggtggagattgaaaaaagatagaggtttgtggtttaaaatgcgaaaacataaatatgcataaaattatggttattattatgttaagcaagcat |
313 |
Q |
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| T |
31158242 |
aaattatggtggagattgaaaaaagatagaggtttgtggtttaaaatgcgaaaacataaatatgcataaaattatggttattattgtgttaagcaagcgt |
31158341 |
T |
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| Q |
314 |
acaatgaattgatgtggaacattcaaagcaaaacttcttc-ttttatgaactcacctagagtaagttggtttgttgaaggtacctctattcacatagaga |
412 |
Q |
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| T |
31158342 |
acaatgaattgatgtggaacattcaaagcaaaacttcttctttttatgaactcacctagagtaagttggtttgttgaaggtatctctattcacatagaga |
31158441 |
T |
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| Q |
413 |
ctagtgaatagtaggctattcacatagagatatt |
446 |
Q |
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| T |
31158442 |
ctagtgaatagtaggctattcacatagagatatt |
31158475 |
T |
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