View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1638-INSERTION-14 (Length: 532)
Name: NF1638-INSERTION-14
Description: NF1638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1638-INSERTION-14 |
 | |
|
| [»] chr5 (4 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 271; Significance: 1e-151; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 229 - 532
Target Start/End: Original strand, 7450564 - 7450879
Alignment:
| Q |
229 |
tcagtggcatgcatgtgcttaagccagtggtagtttaattacggaatgaattattatcacttaccagtgtcaatttattaagggactaaa---------- |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7450564 |
tcagtggcatgcatgtgcttaagccagtggtagtttaattacggaatgaattattatcacttaccagtgtcaatttattaagggactaaaaaattaatta |
7450663 |
T |
|
| Q |
319 |
--tcaagtagcaagaatctttgattattctatacaagcctctcgaagatactgacttagctgtggagatttgttgcttttatatgggcaataattaattc |
416 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
7450664 |
aatcaagtagcaagaatctttgattattctatacaagcctctcgaagatactgacttagctgtggagatttgttgcttttatatggggaataattaattc |
7450763 |
T |
|
| Q |
417 |
aaccttttgatgaaagggactagcttaggctttgtcttccaatggaaagctcgtctcttttcttgatggctttttcttcacattatttttccaactagct |
516 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7450764 |
aaccttttgatgaaagggactagcttaggctttgtcttccaatggaaagctcgtctcttttcttgatggctttttcttcacattatttttccaactagct |
7450863 |
T |
|
| Q |
517 |
actagtacttgtgtat |
532 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
7450864 |
actagtacttgtgtat |
7450879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 8 - 178
Target Start/End: Original strand, 7450346 - 7450513
Alignment:
| Q |
8 |
ctttggtcccaagattccatttccacttccctcccttggacacatgtcccatattttatgcctatcacatgtcttattaattttgtaacatacattgtct |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
7450346 |
ctttggtcccaagattccatttccacttccctcccatggacacatgtcccatattttatgcctatcacatgtcttatt---tttgtaacatacattgtct |
7450442 |
T |
|
| Q |
108 |
ttaattagtactcgatttgtacccaatgctattatcaaatttattagttttcatctctagattgagaaccc |
178 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||| ||||||||||| ||||||||||||||||||| |
|
|
| T |
7450443 |
ttaattagtactcgatttgtacccaatgttattatcaaaattattagtttttatctctagattgagaaccc |
7450513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 44 - 81
Target Start/End: Original strand, 7436288 - 7436325
Alignment:
| Q |
44 |
tggacacatgtcccatattttatgcctatcacatgtct |
81 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
7436288 |
tggacacatgtcacatattttatgcctatcacatgtct |
7436325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 421 - 460
Target Start/End: Original strand, 7436755 - 7436794
Alignment:
| Q |
421 |
ttttgatgaaagggactagcttaggctttgtcttccaatg |
460 |
Q |
| |
|
|||| ||||||||||||||||| ||||||||||||||||| |
|
|
| T |
7436755 |
tttttatgaaagggactagctttggctttgtcttccaatg |
7436794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University