View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1638-INSERTION-17 (Length: 457)
Name: NF1638-INSERTION-17
Description: NF1638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1638-INSERTION-17 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 18 - 457
Target Start/End: Original strand, 39240068 - 39240501
Alignment:
| Q |
18 |
atgaagagtatagcagctatagcaagcaagtgttttaacttttttgtgtggatgattaatgtttttgatgatgtatggaaagtggtggttgctttctttt |
117 |
Q |
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| T |
39240068 |
atgaagagtatagtagctatagcaaacaagtgttttaacttttttgtgtggatgattaatgttgttgatgatgtatggaaagtggtggttgctttctttt |
39240167 |
T |
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| Q |
118 |
atatgtaaaaatatatagatagattgatttaggacgcgtagcgtggtgtgagaaagagacagtgtataannnnnnncagtttaatgtttgatgtttcaaa |
217 |
Q |
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| T |
39240168 |
atatgtaaaaata----gatagattgatttaggacgcgtagcgtggtgtgagaaagagacagtgtataatttttttcagtttaatgtttgatgtttcaa- |
39240262 |
T |
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| Q |
218 |
tataatatagtgtgaactgtgaggggaggaaaggacgaagagccaactcgttaaggacacgtctttactgtataacgtggttggaaacaacctggaaaca |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
39240263 |
tataatatagtgtgaactgtgaggggaggaaaggacgaagagccaactcgttaaggacacgtctttactgta--acgtggttggaaacaacctggaaaca |
39240360 |
T |
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| Q |
318 |
taacattatttgtttattgctaactattttgcccttaacttgtactgtactcatcattggttcaccgagttaccaaccaactattttagtcaaaaactta |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39240361 |
taacattatttgtttattgctaactattttgcccttaacttgtactgtactcatcattggttcaccgagttaccaaccaactattttagtcaaaaactta |
39240460 |
T |
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| Q |
418 |
agactgataatgtaaaac-atctgatactcataataatcta |
457 |
Q |
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| T |
39240461 |
agactcataatgtaaaacaatctgatactcataataatcta |
39240501 |
T |
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