View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1638-INSERTION-3 (Length: 405)
Name: NF1638-INSERTION-3
Description: NF1638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1638-INSERTION-3 |
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| [»] chr5 (2 HSPs) |
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| [»] chr3 (3 HSPs) |
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| [»] scaffold0283 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 395; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 7 - 405
Target Start/End: Original strand, 41245570 - 41245968
Alignment:
| Q |
7 |
atgactgaaagaaaaacagaattggaatggaaaattacctggccaacattcccattaacaaacacattactgcaattgagatctctatgaatgatgcaag |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41245570 |
atgactgaaagaaaaacagaattggaatggaaaattacctggccaacattcccattaacaaacacattactgcaattgagatctctatgaatgatgcaag |
41245669 |
T |
|
| Q |
107 |
gctcatgagtgtgcaaataattcaaccctttcagaatctgccttgaccatttcttcaatgccttcatagaaacatgtctatgtttcttcctatactctct |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41245670 |
gctcatgagtgtgcaaataattcaaccctttcagaatctgccttgaccatttcttcaatgccttcatagaaacatgtctatgtttcttcctatactctct |
41245769 |
T |
|
| Q |
207 |
caaattcccacttgtacaaacctcggtgatgaaattaagcgtgttgtttcgatcatcgctccaaacactataaagttcaatgatgtttttgtttgtcaag |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41245770 |
caaattcccacttgtacaaacctcggtgatgaaattaagcgtgttgtttcgatcatcgctccaaacactataaagttcaatgatgtttttgtttgtcaag |
41245869 |
T |
|
| Q |
307 |
cttctcaataacctcacttcagaataaagcctctctaccatagcaggttcatcacagaagtttcttagcttcacttggttccatgctacctcaattcct |
405 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
41245870 |
cttctcaataacctcacttcagaataaagcctctctaccatagcaggttcatcacagaagtttcttagcttcacttggttccatgctacctctattcct |
41245968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 43 - 200
Target Start/End: Complemental strand, 42725380 - 42725223
Alignment:
| Q |
43 |
acctggccaacattcccattaacaaacacattactgcaattgagatctctatgaatgatgcaaggctcatgagtgtgcaaataattcaaccctttcagaa |
142 |
Q |
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|||||||||| |||||||||||||| | |||||||||||| |||||||| || || || || || ||||| || || | ||| | ||| |||| |||| |
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| T |
42725380 |
acctggccaatgttcccattaacaaagatattactgcaattaagatctctgtggataatacagggatcatgtgtatgaagatactccaatccttcaagaa |
42725281 |
T |
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| Q |
143 |
tctgccttgaccatttcttcaatgccttcatagaaacatgtctatgtttcttcctata |
200 |
Q |
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|| ||||||||||||| || ||||| || |||||||||| ||||||||||||||| |
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| T |
42725280 |
cttgttttgaccatttcttaaacgccttaatcgaaacatgtcgatgtttcttcctata |
42725223 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 117; Significance: 2e-59; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 41 - 405
Target Start/End: Original strand, 22263637 - 22264001
Alignment:
| Q |
41 |
ttacctggccaacattcccattaacaaacacattactgcaattgagatctctatgaatgatgcaaggctcatgagtgtgcaaataattcaaccctttcag |
140 |
Q |
| |
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||||||||||| ||| ||||| ||||||||||||||||||||||| |||||||| ||||| ||||| |||||| ||||||||||||||||||| || |
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| T |
22263637 |
ttacctggccagtatttccattgacaaacacattactgcaattgaggtctctatggatgatacaaggatcatgaacatgcaaataattcaacccttccaa |
22263736 |
T |
|
| Q |
141 |
aatctgccttgaccatttcttcaatgccttcatagaaacatgtctatgtttcttcctatactctctcaaattcccacttgtacaaacctcggtgatgaaa |
240 |
Q |
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|| || | ||||| |||||||| ||||| | |||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| |
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| T |
22263737 |
tatttgtttagaccacttcttcaaagccttaagagaaacatgtttatgtttcttcctatactccctcaaattcccacttgtacaaacctcagtgatgaaa |
22263836 |
T |
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| Q |
241 |
ttaagcgtgttgtttcgatcatcgctccaaacactataaagttcaatgatgtttttgtttgtcaagcttctcaataacctcacttcagaataaagcctct |
340 |
Q |
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|| || ||||| | | ||| ||||||||| | |||||| ||||||||||||||||||||| | || | | | ||||||||||| ||||| || | |
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| T |
22263837 |
ttcagtgtgttatgctccttatccctccaaacattgtaaagtgcaatgatgtttttgtttgtcatgtttttaagaagtctcacttcagagtaaagtcttt |
22263936 |
T |
|
| Q |
341 |
ctaccatagcaggttcatcacagaagtttcttagcttcacttggttccatgctacctcaattcct |
405 |
Q |
| |
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| | ||| ||||| |||| | ||| ||||| ||||| ||||| ||||||||||| || |||||| |
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| T |
22263937 |
caatcattgcagggtcattgctgaaatttctgagcttaacttgattccatgctacttctattcct |
22264001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 41 - 405
Target Start/End: Complemental strand, 22270203 - 22269839
Alignment:
| Q |
41 |
ttacctggccaacattcccattaacaaacacattactgcaattgagatctctatgaatgatgcaaggctcatgagtgtgcaaataattcaaccctttcag |
140 |
Q |
| |
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||||||||||| ||| ||||| ||||||||||||||||||||||| |||||||| ||||| ||||| |||||| ||||||||||||||||||| || |
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| T |
22270203 |
ttacctggccagtatttccattgacaaacacattactgcaattgaggtctctatggatgatacaaggatcatgaacatgcaaataattcaacccttccaa |
22270104 |
T |
|
| Q |
141 |
aatctgccttgaccatttcttcaatgccttcatagaaacatgtctatgtttcttcctatactctctcaaattcccacttgtacaaacctcggtgatgaaa |
240 |
Q |
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|| || | ||||| |||||||| ||||| | |||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| |
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| T |
22270103 |
tatttgtttagaccacttcttcaaagccttaagagaaacatgtttatgtttcttcctatactccctcaaattcccacttgtacaaacctcagtgatgaaa |
22270004 |
T |
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| Q |
241 |
ttaagcgtgttgtttcgatcatcgctccaaacactataaagttcaatgatgtttttgtttgtcaagcttctcaataacctcacttcagaataaagcctct |
340 |
Q |
| |
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|| || ||||| | | ||| ||||||||| | |||||| ||||||||||||||||||||| | || | | | ||||||||||| ||||| || | |
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| T |
22270003 |
ttcagtgtgttatgctccttatccctccaaacattgtaaagtgcaatgatgtttttgtttgtcatgtttttaagaagtctcacttcagagtaaagtcttt |
22269904 |
T |
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| Q |
341 |
ctaccatagcaggttcatcacagaagtttcttagcttcacttggttccatgctacctcaattcct |
405 |
Q |
| |
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| | ||| ||||| |||| | ||| ||||| ||||| ||||| ||||||||||| || |||||| |
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| T |
22269903 |
caatcattgcagggtcattgctgaaatttctgagcttaacttgattccatgctacttctattcct |
22269839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 35 - 338
Target Start/End: Original strand, 45874200 - 45874503
Alignment:
| Q |
35 |
ggaaaattacctggccaacattcccattaacaaacacattactgcaattgagatctctatgaatgatgcaaggctcatgagtgtgcaaataattcaaccc |
134 |
Q |
| |
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||||| ||||||||||| ||| ||||| | ||||||||| |||||||||||||||||||||||||| || || |||||| ||||||||||||||||| |
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| T |
45874200 |
ggaaatttacctggccagtatttccattgataaacacattgctgcaattgagatctctatgaatgatacatggatcatgaacatgcaaataattcaaccc |
45874299 |
T |
|
| Q |
135 |
tttcagaatctgccttgaccatttcttcaatgccttcatagaaacatgtctatgtttcttcctatactctctcaaattcccacttgtacaaacctcggtg |
234 |
Q |
| |
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|| || ||| ||| | ||||| |||||||| ||||| ||||||||||| |||||||||||||||| |||||||| ||||||||||||||||| || ||| |
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| T |
45874300 |
ttccaaaatttgcttagaccacttcttcaaagccttaatagaaacatgcttatgtttcttcctataatctctcaagttcccacttgtacaaacttcagtg |
45874399 |
T |
|
| Q |
235 |
atgaaattaagcgtgttgtttcgatcatcgctccaaacactataaagttcaatgatgtttttgtttgtcaagcttctcaataacctcacttcagaataaa |
334 |
Q |
| |
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||||||||||| |||| | ||||| ||||||||| ||||| |||||||||||| |||| ||| |||||| | || || |||||||| |||| |
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| T |
45874400 |
atgaaattaagtatgttatgatcttcatctctccaaacatagtaaagggcaatgatgttttcgtttctcatgcttctaagcaatctaacttcagagtaaa |
45874499 |
T |
|
| Q |
335 |
gcct |
338 |
Q |
| |
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|||| |
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|
| T |
45874500 |
gcct |
45874503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 112; Significance: 2e-56; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 64 - 335
Target Start/End: Original strand, 10082862 - 10083133
Alignment:
| Q |
64 |
acaaacacattactgcaattgagatctctatgaatgatgcaaggctcatgagtgtgcaaataattcaaccctttcagaatctgccttgaccatttcttca |
163 |
Q |
| |
|
||||| ||||||||||||||||| |||||||||||||| ||||| ||||| |||||||||||||||||||||| ||||||| | ||||| ||||||| |
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|
| T |
10082862 |
acaaaaacattactgcaattgaggtctctatgaatgatacaaggatcatgcacatgcaaataattcaaccctttcaaaatctgcttagaccacttcttca |
10082961 |
T |
|
| Q |
164 |
atgccttcatagaaacatgtctatgtttcttcctatactctctcaaattcccacttgtacaaacctcggtgatgaaattaagcgtgttgtttcgatcatc |
263 |
Q |
| |
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| || | | ||||||||| |||||||||||||||| || |||||||||||||||||||||||||| ||||||||||| || || || | |||||| |
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| T |
10082962 |
aagcttgaagagaaacatgcttatgtttcttcctatattccctcaaattcccacttgtacaaacctcagtgatgaaattcagtgtattatgatcatcatc |
10083061 |
T |
|
| Q |
264 |
gctccaaacactataaagttcaatgatgtttttgtttgtcaagcttctcaataacctcacttcagaataaag |
335 |
Q |
| |
|
||||||||| |||||||| ||||||||||| |||| |||| |||||| | ||| ||||||||||| ||||| |
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|
| T |
10083062 |
cctccaaacattataaagtgcaatgatgtttctgttcgtcatgcttctaagtaatctcacttcagagtaaag |
10083133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0283 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0283
Description:
Target: scaffold0283; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 43 - 200
Target Start/End: Complemental strand, 19354 - 19197
Alignment:
| Q |
43 |
acctggccaacattcccattaacaaacacattactgcaattgagatctctatgaatgatgcaaggctcatgagtgtgcaaataattcaaccctttcagaa |
142 |
Q |
| |
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|||||||||| |||||||||||||| | |||||||||||| |||||||| || || || || || ||||| || || | ||| | ||| |||| |||| |
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| T |
19354 |
acctggccaatgttcccattaacaaagatattactgcaattaagatctctgtggataatacagggatcatgtgtatgaagatactccaatccttcaagaa |
19255 |
T |
|
| Q |
143 |
tctgccttgaccatttcttcaatgccttcatagaaacatgtctatgtttcttcctata |
200 |
Q |
| |
|
|| ||||||||||||| || ||||| || |||||||||| ||||||||||||||| |
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|
| T |
19254 |
cttgttttgaccatttcttaaacgccttaatcgaaacatgtcgatgtttcttcctata |
19197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 109 - 149
Target Start/End: Original strand, 20625809 - 20625849
Alignment:
| Q |
109 |
tcatgagtgtgcaaataattcaaccctttcagaatctgcct |
149 |
Q |
| |
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|||||| |||||||||||||||||||||||| ||||||||| |
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|
| T |
20625809 |
tcatgaatgtgcaaataattcaaccctttcaaaatctgcct |
20625849 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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