View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1638-INSERTION-7 (Length: 135)
Name: NF1638-INSERTION-7
Description: NF1638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1638-INSERTION-7 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 128; Significance: 1e-66; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 128; E-Value: 1e-66
Query Start/End: Original strand, 8 - 135
Target Start/End: Complemental strand, 35564361 - 35564234
Alignment:
| Q |
8 |
agatagaggaatcttgttggcctcataagacgaaatatgaataacaagctcagtatcattaagcctacttgttgaaactacaaaagcagaattgtaattt |
107 |
Q |
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| T |
35564361 |
agatagaggaatcttgttggcctcataagacgaaatatgaataacaagctcagtatcattaagcctacttgttgaaactacaaaagcagaattgtaattt |
35564262 |
T |
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| Q |
108 |
ggaattttcttcctttgtgattctttgt |
135 |
Q |
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| T |
35564261 |
ggaattttcttcctttgtgattctttgt |
35564234 |
T |
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Target: chr1 (Bit Score: 30; Significance: 0.00000004; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 39 - 104
Target Start/End: Original strand, 18803510 - 18803575
Alignment:
| Q |
39 |
gaaatatgaataacaagctcagtatcattaagcctacttgttgaaactacaaaagcagaattgtaa |
104 |
Q |
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| T |
18803510 |
gaaatctgaatagcaacttcactatcatttagccaacttgttgaaactacaaaaccagagttgtaa |
18803575 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 61 - 104
Target Start/End: Original strand, 18782598 - 18782641
Alignment:
| Q |
61 |
tatcattaagcctacttgttgaaactacaaaagcagaattgtaa |
104 |
Q |
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| T |
18782598 |
tatcattgagccaacttgttgaaactacaaaaccagagttgtaa |
18782641 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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