View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1638-INSERTION-9 (Length: 166)

Name: NF1638-INSERTION-9
Description: NF1638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1638-INSERTION-9
NF1638-INSERTION-9
[»] chr5 (10 HSPs)
chr5 (6-166)||(3299491-3299651)
chr5 (6-166)||(3392384-3392544)
chr5 (40-166)||(1849923-1850049)
chr5 (37-164)||(40418243-40418367)
chr5 (40-166)||(1163690-1163813)
chr5 (37-166)||(39879772-39879898)
chr5 (37-166)||(38987663-38987789)
chr5 (37-166)||(39726376-39726502)
chr5 (37-165)||(39399818-39399943)
chr5 (37-162)||(39168808-39168930)
[»] chr4 (2 HSPs)
chr4 (37-166)||(25912292-25912418)
chr4 (43-109)||(44444772-44444838)


Alignment Details
Target: chr5 (Bit Score: 161; Significance: 4e-86; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 161; E-Value: 4e-86
Query Start/End: Original strand, 6 - 166
Target Start/End: Complemental strand, 3299651 - 3299491
Alignment:
Q  6 cagcaggaaggtttgtatctactcctccagaagacaggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcttgatttgaaa 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3299651 cagcaggaaggtttgtatctactcctccagaagacaggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcttgatttgaaa 3299552  T
Q  106 agttgtgtgattattatttccaatatctttcacacgagcaaccatggcatcagctaaacga 166  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3299551 agttgtgtgattattatttccaatatctttcacacgagcaaccatggcatcagctaaacga 3299491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 161; E-Value: 4e-86
Query Start/End: Original strand, 6 - 166
Target Start/End: Complemental strand, 3392544 - 3392384
Alignment:
Q  6 cagcaggaaggtttgtatctactcctccagaagacaggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcttgatttgaaa 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3392544 cagcaggaaggtttgtatctactcctccagaagacaggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcttgatttgaaa 3392445  T
Q  106 agttgtgtgattattatttccaatatctttcacacgagcaaccatggcatcagctaaacga 166  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3392444 agttgtgtgattattatttccaatatctttcacacgagcaaccatggcatcagctaaacga 3392384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 107; E-Value: 6e-54
Query Start/End: Original strand, 40 - 166
Target Start/End: Complemental strand, 1850049 - 1849923
Alignment:
Q  40 caggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcttgatttgaaaagttgtgtgattattatttccaatatctttcaca 139  Q
    ||||||||||||||||||||||||||| |||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  1850049 caggtcataaccaagagcatggtcaccaggttttaaaatacgactaagatgagtcctgatttgaaaagttgtgtgattattatttccaatatctttcaca 1849950  T
Q  140 cgagcaaccatggcatcagctaaacga 166  Q
    |||||||| ||||||| ||||||||||    
T  1849949 cgagcaactatggcattagctaaacga 1849923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 98; E-Value: 1e-48
Query Start/End: Original strand, 37 - 164
Target Start/End: Complemental strand, 40418367 - 40418243
Alignment:
Q  37 agacaggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcttgatttgaaaagttgtgtgattattatttccaatatctttc 136  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||   | |||||||||||||||||||    
T  40418367 agacaggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcctgatttgaaaagttgtg---tcattatttccaatatctttc 40418271  T
Q  137 acacgagcaaccatggcatcagctaaac 164  Q
    |||||||||||||  |||||||||||||    
T  40418270 acacgagcaaccacagcatcagctaaac 40418243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 97; E-Value: 6e-48
Query Start/End: Original strand, 40 - 166
Target Start/End: Original strand, 1163690 - 1163813
Alignment:
Q  40 caggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcttgatttgaaaagttgtgtgattattatttccaatatctttcaca 139  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||   |||||||||||||||||||||||||| |||    
T  1163690 caggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcctgatttgaaaa---gtgtgattattatttccaatatctttgaca 1163786  T
Q  140 cgagcaaccatggcatcagctaaacga 166  Q
    |||||||| ||||||| ||||||||||    
T  1163787 cgagcaactatggcattagctaaacga 1163813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 96; E-Value: 2e-47
Query Start/End: Original strand, 37 - 166
Target Start/End: Complemental strand, 39879898 - 39879772
Alignment:
Q  37 agacaggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcttgatttgaaaagttgtgtgattattatttccaatatctttc 136  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||   | |||||||||| ||||||||    
T  39879898 agacaggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcctgatttgaaaagttgtg---tcattatttccagtatctttc 39879802  T
Q  137 acacgagcaaccatggcatcagctaaacga 166  Q
    |||||||||||||  |||||||||||||||    
T  39879801 acacgagcaaccacagcatcagctaaacga 39879772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 88; E-Value: 1e-42
Query Start/End: Original strand, 37 - 166
Target Start/End: Complemental strand, 38987789 - 38987663
Alignment:
Q  37 agacaggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcttgatttgaaaagttgtgtgattattatttccaatatctttc 136  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| |||||||||||||||||   | |||||||||| ||||||||    
T  38987789 agacaggtcataaccaagagcatggtcaccgggttttaagatacgaccgagatgagtcctgatttgaaaagttgtg---tcattatttccagtatctttc 38987693  T
Q  137 acacgagcaaccatggcatcagctaaacga 166  Q
    |||||||||||||  |||||||||||||||    
T  38987692 acacgagcaaccacagcatcagctaaacga 38987663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 88; E-Value: 1e-42
Query Start/End: Original strand, 37 - 166
Target Start/End: Complemental strand, 39726502 - 39726376
Alignment:
Q  37 agacaggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcttgatttgaaaagttgtgtgattattatttccaatatctttc 136  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| |||||||||||||||||   | |||||||||| ||||||||    
T  39726502 agacaggtcataaccaagagcatggtcaccgggttttaagatacgaccgagatgagtcctgatttgaaaagttgtg---tcattatttccagtatctttc 39726406  T
Q  137 acacgagcaaccatggcatcagctaaacga 166  Q
    |||||||||||||  |||||||||||||||    
T  39726405 acacgagcaaccacagcatcagctaaacga 39726376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 75; E-Value: 8e-35
Query Start/End: Original strand, 37 - 165
Target Start/End: Complemental strand, 39399943 - 39399818
Alignment:
Q  37 agacaggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcttgatttgaaaagttgtgtgattattatttccaatatctttc 136  Q
    ||||| ||||||||||||||||| |||||||| |||||||||| |||||||||||||| |||||||||||||||||   | ||||||||||| || || |    
T  39399943 agacaagtcataaccaagagcatagtcaccggattttaaaatatgaccaagatgagtcctgatttgaaaagttgtg---tcattatttccaaaattttcc 39399847  T
Q  137 acacgagcaaccatggcatcagctaaacg 165  Q
    ||||||||||||| |||||||||||||||    
T  39399846 acacgagcaaccacggcatcagctaaacg 39399818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 72; E-Value: 5e-33
Query Start/End: Original strand, 37 - 162
Target Start/End: Complemental strand, 39168930 - 39168808
Alignment:
Q  37 agacaggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcttgatttgaaaagttgtgtgattattatttccaatatctttc 136  Q
    ||||| ||||||||||||||||| |||||||| |||||||||| |||| |||||||| ||||||||||||||||||   | ||||||||||| ||||| |    
T  39168930 agacaagtcataaccaagagcatagtcaccggattttaaaatatgacctagatgagttttgatttgaaaagttgtg---tcattatttccaaaatcttcc 39168834  T
Q  137 acacgagcaaccatggcatcagctaa 162  Q
    ||||||||||||| ||||||||||||    
T  39168833 acacgagcaaccacggcatcagctaa 39168808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 88; Significance: 1e-42; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 88; E-Value: 1e-42
Query Start/End: Original strand, 37 - 166
Target Start/End: Original strand, 25912292 - 25912418
Alignment:
Q  37 agacaggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcttgatttgaaaagttgtgtgattattatttccaatatctttc 136  Q
    |||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| |||||||||||||||||   | |||||||||||||||||||    
T  25912292 agacaggtcataaccaagagcatggtcatcgggttttagaatacgaccaagatgagtcctgatttgaaaagttgtg---tcattatttccaatatctttc 25912388  T
Q  137 acacgagcaaccatggcatcagctaaacga 166  Q
    |||||||||||||   ||||||||||||||    
T  25912389 acacgagcaaccacatcatcagctaaacga 25912418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 43 - 109
Target Start/End: Original strand, 44444772 - 44444838
Alignment:
Q  43 gtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcttgatttgaaaagtt 109  Q
    ||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||    
T  44444772 gtcataaccaagagcatagtcaccaggttttaaaatacgaccaagatgagtcttgatttgaaaagtt 44444838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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