View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16380_high_17 (Length: 317)

Name: NF16380_high_17
Description: NF16380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16380_high_17
NF16380_high_17
[»] chr5 (1 HSPs)
chr5 (1-311)||(13396217-13396527)
[»] chr4 (8 HSPs)
chr4 (16-262)||(3934708-3934954)
chr4 (1-262)||(3921474-3921735)
chr4 (1-296)||(4023462-4023757)
chr4 (111-262)||(3985420-3985571)
chr4 (149-277)||(3808448-3808576)
chr4 (149-275)||(3816024-3816150)
chr4 (155-303)||(3957089-3957237)
chr4 (1-311)||(4000531-4000841)


Alignment Details
Target: chr5 (Bit Score: 295; Significance: 1e-166; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 1 - 311
Target Start/End: Complemental strand, 13396527 - 13396217
Alignment:
Q  1 cctaagtttttgcttttcccttgcaacttttacaagcaattcccacttaacctccctcaagtatctcaaccttggattttgcaaaaatcttagtaaattc 100  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13396527 cctaagtttttgcttttcccttgcaacttttacaagaaattcccacttaacctccctcaagtatctcaaccttggattttgcaaaaatcttagtaaattc 13396428  T
Q  101 tcagtgactttagagaatatagtagaactagatctatcttgttgttctatcaaagcactgccatcatcttttggatgtcaaagcaagctagaagttctgg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13396427 tcagtgactttagagaatatagtagaactagatctatcttgttgttctatcaaagcactgccatcatcttttggatgtcaaagcaagctagaagttctgg 13396328  T
Q  201 ttttacttggcactaaaattgagagtataccttcaagcatcaccaatcttacacgactaagagtactagacatacaattctgctcaaagcttctggctgt 300  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  13396327 ttttacttggcactaaaattgagagtataccttcaagcatcatcaatcttacacgacgaagagtactagacatacaattctgctcaaagcttctggctgt 13396228  T
Q  301 acctatgcttc 311  Q
    |||| ||||||    
T  13396227 acctgtgcttc 13396217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 103; Significance: 3e-51; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 16 - 262
Target Start/End: Original strand, 3934708 - 3934954
Alignment:
Q  16 ttcccttgcaacttttacaagcaattcccacttaacctccctcaagtatctcaaccttggattttgcaaaaatcttagtaaattctcagtgactttagag 115  Q
    ||||||| |||| ||||| ||||||||| | |||| ||||||| | ||||||| ||||  |  |||| |||| || ||| ||||||||||||||||||||    
T  3934708 ttcccttacaacatttaccagcaattccaatttaagctccctccattatctcagcctttcaggttgcgaaaaactaagtgaattctcagtgactttagag 3934807  T
Q  116 aatatagtagaactagatctatcttgttgttctatcaaagcactgccatcatcttttggatgtcaaagcaagctagaagttctggttttacttggcacta 215  Q
    ||||||||||||||||||||||| || ||| | ||||| |||||||||||||||||||||||||||||||| ||||||   |||||||||   | ||||     
T  3934808 aatatagtagaactagatctatcgtggtgtcccatcaatgcactgccatcatcttttggatgtcaaagcaatctagaaaccctggttttaaaagccactc 3934907  T
Q  216 aaattgagagtataccttcaagcatcaccaatcttacacgactaaga 262  Q
    |||||||||| ||||||||||||||||   |||||||| ||||||||    
T  3934908 aaattgagagcataccttcaagcatcaaggatcttacaagactaaga 3934954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 1 - 262
Target Start/End: Original strand, 3921474 - 3921735
Alignment:
Q  1 cctaagtttttgcttttcccttgcaacttttacaagcaattcccacttaacctccctcaagtatctcaaccttggattttgcaaaaatcttagtaaattc 100  Q
    |||||||| |||  |||||||| |||| ||||| ||||||||| | |||| ||||||| | |||||| |||||  |  ||||  ||| || ||| | |||    
T  3921474 cctaagttcttgtgtttcccttacaacatttaccagcaattccaatttaagctccctccattatctcgacctttcaaattgcctaaaactaagtgagttc 3921573  T
Q  101 tcagtgactttagagaatatagtagaactagatctatcttgttgttctatcaaagcactgccatcatcttttggatgtcaaagcaagctagaagttctgg 200  Q
    ||||||||||||||||||||||||||||||||||||||  | ||| | ||||| |||||||||||||||||||||||||||||||| ||||||   |||     
T  3921574 tcagtgactttagagaatatagtagaactagatctatcgggctgtcccatcaatgcactgccatcatcttttggatgtcaaagcaatctagaaaccctga 3921673  T
Q  201 ttttacttggcactaaaattgagagtataccttcaagcatcaccaatcttacacgactaaga 262  Q
     ||||  || |||| |||||||||| |||| |||||||||||  ||||||||| ||||||||    
T  3921674 atttaagtgacactgaaattgagagcatacattcaagcatcaagaatcttacaagactaaga 3921735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 1 - 296
Target Start/End: Complemental strand, 4023757 - 4023462
Alignment:
Q  1 cctaagtttttgcttttcccttgcaacttttacaagcaattcccacttaacctccctcaagtatctcaaccttggattttgcaaaaatcttagtaaattc 100  Q
    ||||||| |||||||||||||| |||| ||| ||||||||||||| |||| ||||||| | |||||||||||||||| |||||| |  || || | ||||    
T  4023757 cctaagtctttgcttttcccttacaacatttgcaagcaattcccatttaagctccctccattatctcaaccttggatcttgcaagagcctaaggacattc 4023658  T
Q  101 tcagtgactttagagaatatagtagaactagatctatcttgttgttctatcaaagcactgccatcatcttttggatgtcaaagcaagctagaagttctgg 200  Q
    ||||||||     | ||| || | |||||||||||| ||     || |||||| ||||||||||||||||||||||||||||||| ||||||| | ||||    
T  4023657 tcagtgacaacttataatttaattgaactagatctaactaacatttgtatcaatgcactgccatcatcttttggatgtcaaagcaggctagaaatactgg 4023558  T
Q  201 ttttacttggcactaaaattgagagtataccttcaagcatcaccaatcttacacgactaagagtactagacatacaattctgctcaaagcttctgg 296  Q
    |||||     || | |||||||||| ||||||||||||||||  ||||||||| ||||||||  | ||||||||| ||| ||||||||||| ||||    
T  4023557 ttttaagatacagtgaaattgagagcataccttcaagcatcaagaatcttacaagactaagaaaattagacatacgattttgctcaaagctcctgg 4023462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 111 - 262
Target Start/End: Complemental strand, 3985571 - 3985420
Alignment:
Q  111 tagagaatatagtagaactagatctatcttgttgttctatcaaagcactgccatcatcttttggatgtcaaagcaagctagaagttctggttttacttgg 210  Q
    ||||||||||||||||||||||||||||  | ||| | ||||| |||||||||||||||||||||||||||||||||||||||   |||||||||   ||    
T  3985571 tagagaatatagtagaactagatctatcaagatgtcccatcaatgcactgccatcatcttttggatgtcaaagcaagctagaaaccctggttttaagagg 3985472  T
Q  211 cactaaaattgagagtataccttcaagcatcaccaatcttacacgactaaga 262  Q
     ||| |||||||||| ||||||||||||||||   |||||||| ||||||||    
T  3985471 tactcaaattgagagcataccttcaagcatcaaggatcttacaagactaaga 3985420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 149 - 277
Target Start/End: Complemental strand, 3808576 - 3808448
Alignment:
Q  149 atcaaagcactgccatcatcttttggatgtcaaagcaagctagaagttctggttttacttggcactaaaattgagagtataccttcaagcatcaccaatc 248  Q
    ||||| |||||||||||||||||||||||||||||||| ||||||   |||  ||||  |  ||||||||||||||| ||||||||||||||||   |||    
T  3808576 atcaatgcactgccatcatcttttggatgtcaaagcaatctagaaaccctgaatttaagttacactaaaattgagagcataccttcaagcatcaaggatc 3808477  T
Q  249 ttacacgactaagagtactagacatacaa 277  Q
    ||||| ||||||||  | |||||||||||    
T  3808476 ttacaagactaagaaaattagacatacaa 3808448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 149 - 275
Target Start/End: Complemental strand, 3816150 - 3816024
Alignment:
Q  149 atcaaagcactgccatcatcttttggatgtcaaagcaagctagaagttctggttttacttggcactaaaattgagagtataccttcaagcatcaccaatc 248  Q
    ||||| ||||||||||||||||||||||||||||| ||||||||| | |||||||||     || | | |||||||  ||||||||||||||||  ||||    
T  3816150 atcaatgcactgccatcatcttttggatgtcaaagaaagctagaaatactggttttaagatacagtgatattgagatcataccttcaagcatcaagaatc 3816051  T
Q  249 ttacacgactaagagtactagacatac 275  Q
    ||||| ||||||||  |||||||||||    
T  3816050 ttacaagactaagaaaactagacatac 3816024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 155 - 303
Target Start/End: Original strand, 3957089 - 3957237
Alignment:
Q  155 gcactgccatcatcttttggatgtcaaagcaagctagaagttctggttttacttggcactaaaattgagagtataccttcaagcatcaccaatcttacac 254  Q
    |||||||||||||||||||||| || | ||||||||||| | |||| |||| |   ||||  ||||||||| ||||| || |||||||  ||||| |||     
T  3957089 gcactgccatcatcttttggatttctaggcaagctagaaatcctggatttagtattcactgcaattgagagcataccgtcgagcatcaagaatctcacaa 3957188  T
Q  255 gactaagagtactagacatacaattctgctcaaagcttctggctgtacc 303  Q
    ||||||||  | ||||||||| ||| |||||||||||| ||||| ||||    
T  3957189 gactaagaaaattagacatacgattttgctcaaagcttgtggctctacc 3957237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 311
Target Start/End: Complemental strand, 4000841 - 4000531
Alignment:
Q  1 cctaagtttttgcttttcccttgcaacttttacaagcaattcccacttaacctccctcaagtatctcaaccttggattttgcaaaaatcttagtaaattc 100  Q
    |||||||  ||||||||||||| |||| ||||| ||||||||||| |||| |||||||   ||||| ||||||||   ||||| || ||| || | ||||    
T  4000841 cctaagtcattgcttttcccttacaacatttactagcaattcccatttaagctccctcctttatctaaaccttggtagttgcataagtctaaggacattc 4000742  T
Q  101 tcagtgactttagagaatatagtagaactagatctatcttgttgttctatcaaagcactgccatcatcttttggatgtcaaagcaagctagaagttctgg 200  Q
    || || ||   | | ||| || || ||||||||||| ||  |  |  |||||| | |||||||||||  ||| |||||||||||||||| ||| | ||||    
T  4000741 tcggtaacaacaaataatttaataaaactagatctaactgatattggtatcaatgaactgccatcattatttagatgtcaaagcaagcttgaaatcctgg 4000642  T
Q  201 ttttacttggcactaaaattgagagtataccttcaagcatcaccaatcttacacgactaagagtactagacatacaattctgctcaaagcttctggctgt 300  Q
    |||||      | | |||||||||  |||||||| ||||||   ||||||||| ||||||||  | ||||||||| ||  |||| ||||||||||||| |    
T  4000641 ttttaagaaagagtgaaattgagatcataccttctagcatccagaatcttacaagactaagaaaattagacatacgatattgcttaaagcttctggctct 4000542  T
Q  301 acctatgcttc 311  Q
    |||| ||||||    
T  4000541 acctgtgcttc 4000531  T

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