View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16380_high_19 (Length: 311)
Name: NF16380_high_19
Description: NF16380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16380_high_19 |
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Alignment Details
Target: chr3 (Bit Score: 157; Significance: 2e-83; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 10 - 170
Target Start/End: Complemental strand, 47258705 - 47258545
Alignment:
| Q |
10 |
aagaaaataaagaaaaggtatatggaatattcaaagatggtgaagaaggcttacgatgcaatgtagaaggatgaaacacccaacaattcaaggttgatcc |
109 |
Q |
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| T |
47258705 |
aagaaaataaagaaaaggtatatggaatatttaaagatggtgaagaaggcttacgatgcaatgtagaaggatgaaacacccaacaattcaaggttgatcc |
47258606 |
T |
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| Q |
110 |
ttctgatagggtgagaagataggaatatatctatgtatgatacagcaagatgaagtgtatc |
170 |
Q |
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| T |
47258605 |
ttctgatagggtgagaagataggaatatatctatgtatgatacagcaagatgaagtgtatc |
47258545 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 165 - 292
Target Start/End: Complemental strand, 47258473 - 47258346
Alignment:
| Q |
165 |
tgtatctctgaagcatctccatgtaatccttcattggtcttctcttttcctccaactaagaaaaacaaatagaatcttnnnnnnngaagagggaagaaga |
264 |
Q |
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| T |
47258473 |
tgtatctctgaagtatctccatgtaatccttcattggtcttctcttttcctccaactaagaaaaacaaatagaatcttaaaaaaagaagagggaaaaaga |
47258374 |
T |
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| Q |
265 |
tagttgtagaaatgtgttacctccattg |
292 |
Q |
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| T |
47258373 |
tagttgtagaaatgtgttacctccattg |
47258346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 53 - 170
Target Start/End: Complemental strand, 47266031 - 47265914
Alignment:
| Q |
53 |
agaaggcttacgatgcaatgtagaaggatgaaacacccaacaattcaaggttgatccttctgatagggtgagaagataggaatatatctatgtatgatac |
152 |
Q |
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| T |
47266031 |
agaaggcttacgatgcaatgtacatggatgaaacacccagcaattgaagcttgaccctacagatagggtaataagataggaacctatctatgtatgaaac |
47265932 |
T |
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| Q |
153 |
agcaagatgaagtgtatc |
170 |
Q |
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| T |
47265931 |
agcgcgatgaagtgtatc |
47265914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 169 - 224
Target Start/End: Complemental strand, 47265838 - 47265783
Alignment:
| Q |
169 |
tctctgaagcatctccatgtaatccttcattggtcttctcttttcctccaactaag |
224 |
Q |
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| T |
47265838 |
tctctgaactatatccatgtaatccttcattggtcttctctttgtctccatctaag |
47265783 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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