View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16380_high_25 (Length: 270)
Name: NF16380_high_25
Description: NF16380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16380_high_25 |
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Alignment Details
Target: chr4 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 13 - 258
Target Start/End: Original strand, 52719787 - 52720035
Alignment:
| Q |
13 |
aatatgttttggattagggttgtgcatgtgcaattacattcctatgactacattctatcacacatatctcgatcttttgataagatcatatcagaactca |
112 |
Q |
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| T |
52719787 |
aatatgttttggattagggttgtgcatgtgcaattacatccctatgactacattctatcatacatatctcgatcttttgataagatcataccagaactca |
52719886 |
T |
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| Q |
113 |
aattttaagtttgaattttagatttaaagaaaattaaacattagtttaaaatctaaaccatttaatcttaattgaatgatcgagatagtatgaccgtgtg |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
52719887 |
aattttaagtttgaattttagatttaaagaaaattaaaatttggtttaaaatctaaaccatttaatcttaattgaatgatcgagatagtatgaccgcgtg |
52719986 |
T |
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| Q |
213 |
cattcacaaaaaatttaacc---gtccatatcttttacatgtagtatgt |
258 |
Q |
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|||||||||||||||||||| |||||||||||||| ||||||||||| |
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| T |
52719987 |
cattcacaaaaaatttaaccaaggtccatatcttttatatgtagtatgt |
52720035 |
T |
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