View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16380_high_3 (Length: 590)
Name: NF16380_high_3
Description: NF16380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16380_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 534; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 534; E-Value: 0
Query Start/End: Original strand, 1 - 574
Target Start/End: Complemental strand, 26933306 - 26932733
Alignment:
| Q |
1 |
attttaaattcagagattgggagaatggcattatcaacatccatagttagtgatgcatgtatgtgggtagtttattttatagtaatcaatggaactttag |
100 |
Q |
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| T |
26933306 |
attttaaattcagagattgggagaatggcattatcaacatccatagttagtgatgcatgtatgtgggtagtttattttatagtaatcaatggaactttag |
26933207 |
T |
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| Q |
101 |
ccttggaacgtaaatcatataaatttcttctaaaaatctctatgacaattggttatttcgccgtcttannnnnnnngttaaggccattagttatatggat |
200 |
Q |
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| T |
26933206 |
ccttggaacgtaaatcatataaatttcttctagaaatgtctatgacaattggttatttcgccgtcttatattttttgttaaggccattagttatatggat |
26933107 |
T |
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| Q |
201 |
ctcgaaccgcaatccaaaggaaaagccgatgacggaaagccatttcttgatgataattggtatacttttgatagttggactctccgcacaaattgcggga |
300 |
Q |
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| T |
26933106 |
ctcgaaccgcaatccaaagggaaagtcgatgacggaaagccatttcttgatgataattggtatacttttgatagttggactctccgcacaaattgcggga |
26933007 |
T |
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| Q |
301 |
caatcttcttttatcattgcgttttggtttggtttgtttttgccggatggtcctcctttaggttctattttgagtgaaagacttggtactattggttcta |
400 |
Q |
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| T |
26933006 |
caatcttcttttatcattgcgttttggtttggtttgtttttgccggatggtcctcctttaggttctattttgagtgaaagacttggtactattggttcta |
26932907 |
T |
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| Q |
401 |
ctttgactgttccagcttattgtactattagtgggttgaggacaaaagttcctaatttagtagggccaaaaatagcattcatggaggttatcataattgc |
500 |
Q |
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| T |
26932906 |
ctttgactgttccagcttattgtactattagtgggttgaggacaaaagttcctaatttagtagggccaaaaatagcattcatggaggttatcataattgc |
26932807 |
T |
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| Q |
501 |
tgggtatataggaaaatttgttggaaccattataccatcactttactttcatattgaattttgggattcctttg |
574 |
Q |
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| T |
26932806 |
tgggtatataggaaaatttgttggaaccattataccatcactttactttcatattgaattttgggattcctttg |
26932733 |
T |
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