View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16380_high_35 (Length: 239)
Name: NF16380_high_35
Description: NF16380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16380_high_35 |
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Alignment Details
Target: chr8 (Bit Score: 217; Significance: 1e-119; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 34721749 - 34721969
Alignment:
| Q |
1 |
tcctatgtcaattagatccaaacaatcatacagttgttaagaagctttacctgctacattgctggcaaaatcgacgttccaaaccgtctataactaccat |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
34721749 |
tcctatgtcaattagatccaaacaatcatacagttgttaagaagctttacctgctacattgctggcaaaatcgacgttccaaaccatctataactaccat |
34721848 |
T |
|
| Q |
101 |
aggagatttggaatgatctacacaaactcttcgtttgcgataataatgttttgccgatgaaaggtcaaggccacaaccttcaacctggcagagaggcgga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34721849 |
aggagatttggaatgatctacacaaactcttcgtttgcgataataatgttttgccgatgaaaggtcaaggccacaaccttcaacctggcagagaggcgga |
34721948 |
T |
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| Q |
201 |
cattgtaagttctgatcattg |
221 |
Q |
| |
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||||||||||||||||||||| |
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| T |
34721949 |
cattgtaagttctgatcattg |
34721969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 34726880 - 34727100
Alignment:
| Q |
1 |
tcctatgtcaattagatccaaacaatcatacagttgttaagaagctttacctgctacattgctggcaaaatcgacgttccaaaccgtctataactaccat |
100 |
Q |
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|
||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |
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| T |
34726880 |
tcctatgtcaattaggtccaaataatcatacagttgttaagaagctttacctgctacattgctggcaaaatcgacgttccaaaccatctataaccaccat |
34726979 |
T |
|
| Q |
101 |
aggagatttggaatgatctacacaaactcttcgtttgcgataataatgttttgccgatgaaaggtcaaggccacaaccttcaacctggcagagaggcgga |
200 |
Q |
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| T |
34726980 |
aggagatttggcatgactttcacaaactcttcgtttgcaatgataatcttttgccgatgaaaggttaaggccacaaccttcaacctggcagtgtggtgga |
34727079 |
T |
|
| Q |
201 |
cattgtaagttctgatcattg |
221 |
Q |
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||||||||||||||| ||||| |
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| T |
34727080 |
cattgtaagttctgaccattg |
34727100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 190
Target Start/End: Original strand, 34731058 - 34731247
Alignment:
| Q |
1 |
tcctatgtcaattagatccaaacaatcatacagttgttaagaagctttacctgctacattgctggcaaaatcgacgttccaaaccgtctataactaccat |
100 |
Q |
| |
|
|||||||||||||| || ||||||||||||| || |||||||||||||||||| |||||||||||||||||||||| ||| ||| |||||||| ||||| |
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| T |
34731058 |
tcctatgtcaattatattgaaacaatcatacatttattaagaagctttacctgccacattgctggcaaaatcgacgtaccataccatctataaccaccat |
34731157 |
T |
|
| Q |
101 |
aggagatttggaatgatctacacaaactcttcgtttgcgataataatgttttgccgatgaaaggtcaaggccacaaccttcaacctggca |
190 |
Q |
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|||||||||||||||| | |||||||||||||||| |||| ||||| |||||| ||||||||||||||||||||||||||||||||||| |
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| T |
34731158 |
aggagatttggaatgactttcacaaactcttcgtttccgatgataatcttttgctgatgaaaggtcaaggccacaaccttcaacctggca |
34731247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 48 - 191
Target Start/End: Complemental strand, 38495292 - 38495149
Alignment:
| Q |
48 |
tacctgctacattgctggcaaaatcgacgttccaaaccgtctataactaccataggagatttggaatgatctacacaaactcttcgtttgcgataataat |
147 |
Q |
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||||||||||||||||||||||||||||| |||||||| ||| || |||| ||| |||||||||||| |||||| ||| |||| |||| |||| |
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| T |
38495292 |
tacctgctacattgctggcaaaatcgacgctccaaaccagctactaccaccacaggcgatttggaatgactgtcacaaattctatgtttccgatggtaat |
38495193 |
T |
|
| Q |
148 |
gttttgccgatgaaaggtcaaggccacaaccttcaacctggcag |
191 |
Q |
| |
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||| || | || ||||| |||||||||||||| ||||||||| |
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| T |
38495192 |
ctttagcaaaagagaggtcgaggccacaaccttccacctggcag |
38495149 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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