View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16380_high_36 (Length: 239)
Name: NF16380_high_36
Description: NF16380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16380_high_36 |
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Alignment Details
Target: chr5 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 195
Target Start/End: Original strand, 13396505 - 13396703
Alignment:
| Q |
1 |
caagggaaaagcaaaaacttaggtccaaatgcacaagcttgtcaagagagaaaattgatggatggacgcttgtc----aacctattacaccatctcatat |
96 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
13396505 |
caagggaaaagcaaaaacttaggtccaaatgcacaagcttgtcaagagagaaaattgatggatggacgcttgtcgatcaacctattacaccatctcatat |
13396604 |
T |
|
| Q |
97 |
tcaataccttaagatttgtggcgtttgaaaagtctggtaactccttcaggtattttgaatggcagagtgtaacttgttttaaattaactagatcctgct |
195 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13396605 |
tcaataccttaagatttgtggcgtttgaaaagtctggtaactccttcaggtattttgaatggcagagtgtaacttgttttaaattaactagatcctgct |
13396703 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 100; Significance: 1e-49; HSPs: 11)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 2 - 193
Target Start/End: Original strand, 4023736 - 4023927
Alignment:
| Q |
2 |
aagggaaaagcaaaaacttaggtccaaatgcacaagcttgtcaagagagaaaattgatggatggacgcttgtcaacctattacaccatctcatattcaat |
101 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| ||| ||| | |||||||||| |
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| T |
4023736 |
aagggaaaagcaaagacttaggtccaaatgcacaagcttgtcaagagagaaaatagatggatggacgcttttcaaattatgacaatgtgccatattcaat |
4023835 |
T |
|
| Q |
102 |
accttaagatttgtggcgtttgaaaagtctggtaactccttcaggtattttgaatggcagagtgtaacttgttttaaattaactagatcctg |
193 |
Q |
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|| |||||||| || || ||||||||||| ||||||||||||||| |||| |||| | ||||| |||| | ||||||||||||||||||||| |
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| T |
4023836 |
actttaagattagtagcttttgaaaagtcaggtaactccttcaggaatttcgaataggagagtctaacctcttttaaattaactagatcctg |
4023927 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 36 - 195
Target Start/End: Original strand, 3985571 - 3985730
Alignment:
| Q |
36 |
agcttgtcaagagagaaaattgatggatggacgcttgtcaacctattacaccatctcatattcaataccttaagatttgtggcgtttgaaaagtctggta |
135 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||| ||| ||| | | ||||||||||||||||||||| |||| |||||||||||||||| |
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| T |
3985571 |
agcttgtcaagagagaaaatagatggatggacgcttgtcaacatataacaacgttggatattcaataccttaagatttatggcttttgaaaagtctggta |
3985670 |
T |
|
| Q |
136 |
actccttcaggtattttgaatggcagagtgtaacttgttttaaattaactagatcctgct |
195 |
Q |
| |
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|||||||||||| || |||| |||||||||||| ||||||||||| ||||||||||| |
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| T |
3985671 |
actccttcaggtcttctgaaaaagagagtgtaacttcttttaaattaattagatcctgct |
3985730 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 1 - 195
Target Start/End: Complemental strand, 3957026 - 3956832
Alignment:
| Q |
1 |
caagggaaaagcaaaaacttaggtccaaatgcacaagcttgtcaagagagaaaattgatggatggacgcttgtcaacctattacaccatctcatattcaa |
100 |
Q |
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|
||||||||| ||| |||||||||||||| | || ||| ||||||||||||||||| || ||||||| ||||||||||| || ||| | | |||||||| |
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| T |
3957026 |
caagggaaaggcataaacttaggtccaatttcaaaagtttgtcaagagagaaaatagacggatggatgcttgtcaacccataacaaccttggatattcaa |
3956927 |
T |
|
| Q |
101 |
taccttaagatttgtggcgtttgaaaagtctggtaactccttcaggtattttgaatggcagagtgtaacttgttttaaattaactagatcctgct |
195 |
Q |
| |
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||| |||||||||||||| |||||||||||||||| | |||||||| || |||||| |||||||||||| |||||||||||| |||||||||| |
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| T |
3956926 |
tacattaagatttgtggcttttgaaaagtctggtatcaccttcaggaatcctgaatgtgagagtgtaacttcttttaaattaaccagatcctgct |
3956832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 2 - 146
Target Start/End: Complemental strand, 3921495 - 3921351
Alignment:
| Q |
2 |
aagggaaaagcaaaaacttaggtccaaatgcacaagcttgtcaagagagaaaattgatggatggacgcttgtcaacctattacaccatctcatattcaat |
101 |
Q |
| |
|
|||||||| ||| ||||||||||||||||||||||||| ||||||| ||||| ||||||||||||||| ||| ||| ||| | | | ||||| |
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| T |
3921495 |
aagggaaacacaagaacttaggtccaaatgcacaagcttctcaagagtaaaaatagatggatggacgctttccaaattatcacaagcagtgacactcaat |
3921396 |
T |
|
| Q |
102 |
accttaagatttgtggcgtttgaaaagtctggtaactccttcagg |
146 |
Q |
| |
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|| |||||||||||||| ||||||||||||||||||||||||||| |
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| T |
3921395 |
actttaagatttgtggcttttgaaaagtctggtaactccttcagg |
3921351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 2 - 193
Target Start/End: Original strand, 4000820 - 4001011
Alignment:
| Q |
2 |
aagggaaaagcaaaaacttaggtccaaatgcacaagcttgtcaagagagaaaattgatggatggacgcttgtcaacctattacaccatc--tcatattca |
99 |
Q |
| |
|
||||||||||||| |||||||||||| ||||||||||| || ||||||||||| ||||| ||||||||| ||| | || | ||| | ||||||| |
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| T |
4000820 |
aagggaaaagcaatgacttaggtccaattgcacaagcttttctagagagaaaatagatgggtggacgctttccaa--tgataggcaatctgtgatattca |
4000917 |
T |
|
| Q |
100 |
ataccttaagatttgtggcgtttgaaaagtctggtaactccttcaggtattttgaatggcagagtgtaacttgttttaaattaactagatcctg |
193 |
Q |
| |
|
|||||||||||||||| || ||||||||||||||||| || || ||| | ||||| | |||| |||| | ||||||||||||||||||||| |
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| T |
4000918 |
ataccttaagatttgtagcttttgaaaagtctggtaattctttaaggaaccttgaactggtgagtctaacctcttttaaattaactagatcctg |
4001011 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 25 - 195
Target Start/End: Original strand, 3808594 - 3808764
Alignment:
| Q |
25 |
ccaaatgcacaagcttgtcaagagagaaaattgatggatggacgcttgtcaacctattacaccatctcatattcaataccttaagatttgtggcgtttga |
124 |
Q |
| |
|
|||| ||| ||||| ||| |||||||||||| ||||||||||||||| ||||| ||||| | | |||| ||| |||| ||||||||||| ||||| |
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| T |
3808594 |
ccaattgctcaagcctgttaagagagaaaatagatggatggacgcttatcaactctttacagattttgatatgaaatgccttcagatttgtggcttttga |
3808693 |
T |
|
| Q |
125 |
aaagtctggtaactccttcaggtattttgaatggcagagtgtaacttgttttaaattaactagatcctgct |
195 |
Q |
| |
|
|||||||||||||||||| | | ||||||||| || | |||||| ||||||||||| ||||||||||| |
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|
| T |
3808694 |
aaagtctggtaactcctttaagaattttgaattagtgaatctaacttcttttaaattaattagatcctgct |
3808764 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 25 - 195
Target Start/End: Original strand, 3816168 - 3816338
Alignment:
| Q |
25 |
ccaaatgcacaagcttgtcaagagagaaaattgatggatggacgcttgtcaacctattacaccatctcatattcaataccttaagatttgtggcgtttga |
124 |
Q |
| |
|
|||| ||| ||||| ||| |||||| ||||| ||||||||||||||| ||| | || ||| | | ||||| ||||||||||||||| |||| ||||| |
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|
| T |
3816168 |
ccaattgctcaagcctgttaagagataaaatagatggatggacgcttttcagctgataacaacttgagatatttaataccttaagatttatggcttttga |
3816267 |
T |
|
| Q |
125 |
aaagtctggtaactccttcaggtattttgaatggcagagtgtaacttgttttaaattaactagatcctgct |
195 |
Q |
| |
|
|||||||||||||||||| | | |||||| ||||| |||||| ||||||||||| ||||||||||| |
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|
| T |
3816268 |
aaagtctggtaactcctttaataacattgaataagagagtctaacttcttttaaattaattagatcctgct |
3816338 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 97 - 146
Target Start/End: Complemental strand, 3934619 - 3934570
Alignment:
| Q |
97 |
tcaataccttaagatttgtggcgtttgaaaagtctggtaactccttcagg |
146 |
Q |
| |
|
||||||| |||||||||||||| |||||||||||||| |||||||||||| |
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|
| T |
3934619 |
tcaatactttaagatttgtggcttttgaaaagtctggcaactccttcagg |
3934570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 93 - 194
Target Start/End: Original strand, 4008648 - 4008749
Alignment:
| Q |
93 |
atattcaataccttaagatttgtggcgtttgaaaagtctggtaactccttcaggtattttgaatggcagagtgtaacttgttttaaattaactagatcct |
192 |
Q |
| |
|
||||||||||| ||||||||||| || ||||||| |||||| |||||||||| | || ||||| ||||| ||| || || ||||||||||||||||| |
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|
| T |
4008648 |
atattcaatactttaagatttgtagcttttgaaaggtctggcaactccttcaaggatcgtgaatcaaagagtctaaattcttgtaaattaactagatcct |
4008747 |
T |
|
| Q |
193 |
gc |
194 |
Q |
| |
|
|| |
|
|
| T |
4008748 |
gc |
4008749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 120 - 191
Target Start/End: Original strand, 3800318 - 3800389
Alignment:
| Q |
120 |
tttgaaaagtctggtaactccttcaggtattttgaatggcagagtgtaacttgttttaaattaactagatcc |
191 |
Q |
| |
|
|||||||||| ||||||||||||| | || |||||| | |||||||||| ||||||||||||||||||| |
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|
| T |
3800318 |
tttgaaaagttaggtaactccttcaagaatcctgaatgtgatagtgtaacttcttttaaattaactagatcc |
3800389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 71
Target Start/End: Complemental strand, 3934696 - 3934645
Alignment:
| Q |
20 |
taggtccaaatgcacaagcttgtcaagagagaaaattgatggatggacgctt |
71 |
Q |
| |
|
|||||||||| |||||||||| ||||||| ||||| ||||||||||||||| |
|
|
| T |
3934696 |
taggtccaaacgcacaagcttctcaagagtaaaaatagatggatggacgctt |
3934645 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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