View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16380_high_4 (Length: 569)
Name: NF16380_high_4
Description: NF16380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16380_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 528; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 528; E-Value: 0
Query Start/End: Original strand, 1 - 557
Target Start/End: Original strand, 54323731 - 54324287
Alignment:
| Q |
1 |
caccacaacttgaaaattgcatagcattagaatatctcaatctttctggtaatttctttgaaggtcctctcccttatacattaggccaactgccttatat |
100 |
Q |
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| T |
54323731 |
caccacaacttgaaaattgcatagcattagaatatctcaatctttctggtaatttctttgaaggtcctctcccttatacattaggccaactgccttatat |
54323830 |
T |
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| Q |
101 |
tcaatcacttgatatatcttcaaaccaattgaatggaacaataccagagtcactccagttatgttcctatctcaaagcacttaacttctctttcaacaaa |
200 |
Q |
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| T |
54323831 |
tcaatcacttgatatatcttcaaaccaattgaatggaacaataccagagtcactccagttatgttcctatctcaaagcacttaacttctctttcaacaaa |
54323930 |
T |
|
| Q |
201 |
ttctcaggaaatgtctcaaacaaaggagcgttttcatctttaaccatagattctttcctaggaaacaataatctatgtggtccatttaaaggcatgcaac |
300 |
Q |
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| T |
54323931 |
ttctcaggaaatgtctcaaacaaaggagcgttttcatctttaaccatagattctttcctaggaaacaataatctatgtggtccatttaaaggcatgcaac |
54324030 |
T |
|
| Q |
301 |
aatgtcataggnnnnnnngttatcatttggtgtttttgctagttcctgtgttactatttggcacacctgtgatatgcatgtgtaggaactccataataat |
400 |
Q |
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| T |
54324031 |
aatgtcataggaaaaaaagttatcatttggtgtttttgctagttcctgtgttactatttggcacacctgtgatatgcatgtgtagggactccataataat |
54324130 |
T |
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| Q |
401 |
caagtcaaaagtgaaaaagaaacttcaagccgttagtaacagatgtgacttggaggatgaagaagtggaaacaaaagagatcaagcatccaagaatttca |
500 |
Q |
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| T |
54324131 |
caagtcaaaagtgaagaagaaacttcaagccgttagtaacagatgtgacttggaggatgaagaagtggaaacaaaagagatcaagcatccaagaatttca |
54324230 |
T |
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| Q |
501 |
tatagacaacttagagaagccactggagggttcaatgcttcaagccttatcggttca |
557 |
Q |
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| T |
54324231 |
tatagacaacttagagaagccactggagggttcaatgcttcaagccttatcggttca |
54324287 |
T |
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