View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16380_high_40 (Length: 212)
Name: NF16380_high_40
Description: NF16380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16380_high_40 |
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Alignment Details
Target: chr8 (Bit Score: 47; Significance: 5e-18; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 42396169 - 42396082
Alignment:
| Q |
1 |
accctaattaaatttgtccttttatggagggaagattcttacaagttacnnnnnnnngcgcgtggaatgaatgaattatatttggaaaaacc |
92 |
Q |
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| T |
42396169 |
accctaattaaatttgtctttttatggagggaagattcttacaagttacaaaaaaaagcgcgtg----gaatgaattatatttggaaaaacc |
42396082 |
T |
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Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 148 - 190
Target Start/End: Complemental strand, 42396053 - 42396011
Alignment:
| Q |
148 |
tttcatttcattggacggacagctagctgtttgcaagaatata |
190 |
Q |
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| T |
42396053 |
tttcatttcattggacggacagctagctgtttgcaagaatata |
42396011 |
T |
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