View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16380_high_5 (Length: 552)
Name: NF16380_high_5
Description: NF16380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16380_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 508; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 508; E-Value: 0
Query Start/End: Original strand, 11 - 537
Target Start/End: Original strand, 30275733 - 30276257
Alignment:
| Q |
11 |
catcagtaatgtttaataatgtatggtaattatgaacacacctgtaatagtgtcagaaccttccggccactagaagttagcagacaataatcaggttgtt |
110 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30275733 |
catcagtaatgtttaataatgtatggtaatt--gaacacacctgtaatagtgtcagaaccttccggccactagaagttagcagacaataatcaggttgtt |
30275830 |
T |
|
| Q |
111 |
cggttgaagacccagctccgccaaacactccagacacaaggtatttctctaaaatccaagaatcacttattgagaatataggaatcactttcttaaagtg |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30275831 |
cggttgaagacccagctccgccaaacactccagacacaaggtatttctctaaaatccaagaatcacttattgagaatataggaatcactttcttaaagtg |
30275930 |
T |
|
| Q |
211 |
gtttatgtgtgtattcaaaacctcttcaatgcaaggaaagagttgatttaccaagtatggcagcagcattaatttctgatcttctaacaaagaacaatac |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30275931 |
gtttatgtgtgtattcaaaacctcttcaatgcaaggaaagagttgatttaccaagtatggcagcagcattaatttctgatcttctaacaaagaacaatac |
30276030 |
T |
|
| Q |
311 |
atgactgcaaacttcgcagcctttatggcagaggacaaaccaacacttacttctgatgtggatttaacaaatttctcaaaacaagtaataaatgacattg |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30276031 |
atgactgcaaacttcgcagcctttatggcagaggacaaaccaacacatacttctgatgtggatttaacaaatttctcaaaacaagtaataaatgacattg |
30276130 |
T |
|
| Q |
411 |
tttcttcatatgaccacaacataagttctgaggcataagcagaagtttctccacataacatcacaaagctcttggtcgcttgtgagatcttagaaaacac |
510 |
Q |
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| T |
30276131 |
tttcttcatatgaccacaacataagttctgaggcataagcagaagtttctccacataacatcacaaagctcttggccgcttgtgagatcttagaaaacac |
30276230 |
T |
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| Q |
511 |
aaacctagcaagctttctgatatatat |
537 |
Q |
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| T |
30276231 |
aaacctagcaagctttctgatatatat |
30276257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 11 - 420
Target Start/End: Original strand, 7779044 - 7779440
Alignment:
| Q |
11 |
catcagtaatgtttaataatgtatggtaattatgaacacacctgtaatagtgtcagaaccttccggccactagaagttagcagacaataatcaggttgtt |
110 |
Q |
| |
|
|||||||||||||||||||| |||||||||| |||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| |
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| T |
7779044 |
catcagtaatgtttaataatatatggtaatt--gaacacacctgtaatagtgtcagaacgttctggccactagaagttagcagacaataatcaggttgtt |
7779141 |
T |
|
| Q |
111 |
cggttgaagacccagctccgccaaacactccagacacaaggtatttctctaaaatccaagaatcacttattgagaatataggaatcactttcttaaagtg |
210 |
Q |
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| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
7779142 |
cttttgaagatccagctccgccaaacactccagacacaaggtatttctctaaaatccaagaatcacttactgagaatataggaatcactttcttaaagtg |
7779241 |
T |
|
| Q |
211 |
gtttatgtgtgtattcaaaacctcttcaatgcaaggaaagagttgatttaccaagtatggcagcagcattaatttctgatcttctaacaaagaacaatac |
310 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||| || |||||||||||||| ||||||||||||||||||||||||||| |||||||| | |
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| T |
7779242 |
gtttatgtgtgtattcaaaa-ctcttcaatgcaaggaaagagatgctttaccaagtatggtagcagcattaatttctgatcttctaac--agaacaatcc |
7779338 |
T |
|
| Q |
311 |
atgactgcaaacttcgcagcctttatggcagaggacaaaccaacacttacttctgatgtggatttaacaaatttctcaaaacaagtaataaatgacattg |
410 |
Q |
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|||||||||||| ||||||||| ||||||||||||||||||||||||||||| |||||||||| || ||||||||||||||||||||||||| |
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| T |
7779339 |
atgactgcaaac-------aatttatggcataggacaaaccaacacttacttctgatgtgcatttaacaaa-ttgtcaaaacaagtaataaatgacattg |
7779430 |
T |
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