View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16380_high_6 (Length: 547)
Name: NF16380_high_6
Description: NF16380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16380_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 498; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 498; E-Value: 0
Query Start/End: Original strand, 12 - 529
Target Start/End: Original strand, 44672268 - 44672785
Alignment:
| Q |
12 |
gagatgaataaaaggttataatcaccccctgctttggcaggggatattgaactgtggggatttgtgatagaaaatacatgaagaaaacaagtttatatac |
111 |
Q |
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| T |
44672268 |
gagatgaataaaaggttataatcaccccctgctttggcaggggatattgaactgtggggatttgtgatagaaaatacatgaagaaaacaagtttatatac |
44672367 |
T |
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| Q |
112 |
tataattgtacataaactttgagagaaccagctcagcattatattgatttaaggtgttggtttctgtggttgttgaatcttatatttagagaatttgttg |
211 |
Q |
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| T |
44672368 |
tataattgtacataaactttgagagaaccagctcagcattatattgatttaaggtgttggtttctgtggttgttgaatcttatatttagagaatttgttg |
44672467 |
T |
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| Q |
212 |
tttttattttaatcaattgtatgcaagaggcaaatggcacgtaaacatgtttgaattaccaaaataggtcgtcattgttataggcagtccataaaatgaa |
311 |
Q |
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| T |
44672468 |
tttttattttaatcaattgtatgcaagaggcaaatggcacggaaacatgtttgaattaccaaaataggtcgtcattgttataggcagtccataaaatgaa |
44672567 |
T |
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| Q |
312 |
attcaatttaacgtaggaggtacaagattcattgtaacacaaggaacaatgaaaaaacaagtgaaactgaaatagtaaagtaaaggtgtaaagaacaaat |
411 |
Q |
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| T |
44672568 |
attcaatttaacgtaggaggtacaagattcattgtaacacaaggaacaatgaaaaaacaagtgaaactgaaatagtaaagtaaaggtgtaaagaacaaat |
44672667 |
T |
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| Q |
412 |
atagaatgtgtggggcgagctaacagtttaccgaagtccgagattttttacagtaggaacgtttcagatgagttgaaaaacagtattactaatatattgg |
511 |
Q |
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| T |
44672668 |
atagaatgtgcggggcgagctaacagtttaccgaagttcgagattttttacagtaggaacgtttcagatgagttgaaaaacagtattgctaatatattgg |
44672767 |
T |
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| Q |
512 |
gggttcgtgcagtgttag |
529 |
Q |
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| T |
44672768 |
gcgttcgtgcagtgttag |
44672785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 436 - 500
Target Start/End: Original strand, 26401699 - 26401763
Alignment:
| Q |
436 |
agtttaccgaagtccgagattttttacagtaggaacgtttcagatgagttgaaaaacagtattac |
500 |
Q |
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| T |
26401699 |
agtttaccgaagtcagaaattttctacagtaggaatgtgccagatgcgttgaaaaacagtattac |
26401763 |
T |
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