View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16380_high_9 (Length: 432)
Name: NF16380_high_9
Description: NF16380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16380_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 376; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 1 - 418
Target Start/End: Original strand, 40804831 - 40805250
Alignment:
| Q |
1 |
ctactagactttaattaatcaaaactcttttcagtacttcactttgtctaaatggttataaagtttccaaatagctagctggcagatactaatcactgta |
100 |
Q |
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| T |
40804831 |
ctactagactttaattaatcaaaactcttttcagtacttcactttgtctaaatggttataaagattccaaatagctagctggcagatactaatcactgta |
40804930 |
T |
|
| Q |
101 |
caatgtgacatgccatgaaaagattaaccccaaccatattcagatgaacactcacaa--caaattctcaataatttctcagtacnnnnnnngcttttatt |
198 |
Q |
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| T |
40804931 |
caaagtggcatgccatgaaaagattaaccccaaccatattcagatgaacactcacaaaacaaattctcaataatttctcagtacaaaaaaagcttttatt |
40805030 |
T |
|
| Q |
199 |
ttgtaagctaaggttttgaggtctctgcaacaacattgcaactacaagttcaaccacatttttccgcaatataaagcttcgcagcgtaactacaagtacg |
298 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40805031 |
ttgtaagctaaggttttgaggtctctgcaacaacattgcaactacaagttcaaccacatttttccgcaatataaagcttcgcagcgtaactacaagtacg |
40805130 |
T |
|
| Q |
299 |
aaaagcaactcaaagccatgtactacagaataaagatcacatttgctgctgccactttcagaaaacagtaagcagtaaaaaagcaagaaaacataatgaa |
398 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40805131 |
aaaagcaactcaaagccatgtactacagaataaagatcacatttgctgctgccactttcagaaaacagtaagcagtaaaaaagcaagaaaacataatgaa |
40805230 |
T |
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| Q |
399 |
atcaaagaagagaactttat |
418 |
Q |
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|||||||||||||||||||| |
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| T |
40805231 |
atcaaagaagagaactttat |
40805250 |
T |
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