View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16380_low_1 (Length: 665)
Name: NF16380_low_1
Description: NF16380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16380_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 479; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 479; E-Value: 0
Query Start/End: Original strand, 150 - 648
Target Start/End: Original strand, 48397464 - 48397962
Alignment:
| Q |
150 |
tgatataatgcacctcgttaattaactcttaccagatctaatcatgctacggaggacaatgtgcaagaagccataaggcttttcaccgtgtctacaatgg |
249 |
Q |
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| T |
48397464 |
tgatataatgcacctcgttaattaactcttaccagatctaatcatgctacggaggacaatgtgcaagaagccataaggcttttcaccgtgtctacaatgg |
48397563 |
T |
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| Q |
250 |
atgcagctaagtcgggaataaaccaacagataaatctctcacctgaaatggcccgtgagatacaggtttgtcgtgtgatgagctcatttctcttttttcc |
349 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| |
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| T |
48397564 |
atgcagctaagtcgggaataaaccaacagataaatctctcacctgaaatggcccgtgagatacaggtttgtcgtgtgatgcgttcatttctcttttttcc |
48397663 |
T |
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| Q |
350 |
atatagttttcatatgctgattagttgtttgtttgctctgagcagcaagcagaagttcagataaaaagaagaatcgggattgggaaccacatatcagaaa |
449 |
Q |
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| T |
48397664 |
atataggtttcatatgctgattagttgtttgtttgctctgagcagcaagcagaagttcagataaagagaagaatcgggattgggaaccacatatcagaaa |
48397763 |
T |
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| Q |
450 |
gaagactgattgatgatctcggcagaatggggatgaatgaatctattgtaagtacttcttagccacttagctgagaagaaagtcatagcttataaaccag |
549 |
Q |
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| T |
48397764 |
gaagactgattgatgatctcggcagaatggggatgaatgaatctattgtaagtactgcttagccacttagctgagaagaaagtcatagcttataaaccag |
48397863 |
T |
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| Q |
550 |
agtttgatgatgccatttggttcaaacttttaaaagatacacattttaaacggggttatgttgggacattcagaaattagctggtgttttgcccatcat |
648 |
Q |
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| T |
48397864 |
agtttgatgatgccatttggttcaaacttttaaaagatacacattttaaacggggttatgttgggacattcagaaattagctggtgttttgcccatcat |
48397962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 10 - 88
Target Start/End: Original strand, 48397324 - 48397402
Alignment:
| Q |
10 |
ataattctaccattgcatgtaaaatccttaatatgcattgcttaacgaaaatcactaaattctattacattaatcatcg |
88 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48397324 |
ataattctaccattgcatgtaaaatccttaatatgcattgcttaacgaaaatcactaaattctattacattaatcatcg |
48397402 |
T |
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