View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16380_low_12 (Length: 387)

Name: NF16380_low_12
Description: NF16380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16380_low_12
NF16380_low_12
[»] chr1 (62 HSPs)
chr1 (16-369)||(5463759-5464113)
chr1 (11-66)||(48259782-48259837)
chr1 (9-62)||(11134383-11134436)
chr1 (16-66)||(48009194-48009244)
chr1 (9-66)||(5854143-5854200)
chr1 (11-68)||(49426334-49426391)
chr1 (16-68)||(10842964-10843016)
chr1 (16-63)||(28751330-28751377)
chr1 (11-66)||(48319924-48319979)
chr1 (16-61)||(12002429-12002474)
chr1 (9-66)||(32806855-32806912)
chr1 (9-66)||(46046150-46046207)
chr1 (9-62)||(46286739-46286792)
chr1 (16-68)||(44108785-44108837)
chr1 (9-64)||(15573790-15573845)
chr1 (9-64)||(15823211-15823266)
chr1 (9-68)||(49894958-49895017)
chr1 (4-66)||(1740557-1740619)
chr1 (20-66)||(2459193-2459239)
chr1 (16-66)||(9915628-9915678)
chr1 (20-66)||(13408253-13408299)
chr1 (6-68)||(30686808-30686870)
chr1 (16-62)||(49468632-49468678)
chr1 (11-68)||(84435-84492)
chr1 (14-63)||(17805766-17805815)
chr1 (9-66)||(28200141-28200198)
chr1 (9-66)||(31491687-31491744)
chr1 (20-69)||(31699204-31699253)
chr1 (16-69)||(40719198-40719251)
chr1 (16-68)||(37437321-37437372)
chr1 (16-63)||(15646995-15647042)
chr1 (15-62)||(15698673-15698720)
chr1 (9-68)||(35847851-35847910)
chr1 (11-66)||(50349776-50349831)
chr1 (9-64)||(50591239-50591294)
chr1 (16-66)||(6377205-6377255)
chr1 (16-66)||(26252303-26252353)
chr1 (6-55)||(29523190-29523239)
chr1 (9-58)||(50094407-50094456)
chr1 (9-61)||(672206-672258)
chr1 (6-66)||(4471326-4471386)
chr1 (9-65)||(22665113-22665169)
chr1 (9-69)||(25151987-25152047)
chr1 (9-69)||(40717276-40717336)
chr1 (22-66)||(43755216-43755260)
chr1 (20-68)||(52125051-52125099)
chr1 (36-67)||(26755180-26755211)
chr1 (11-66)||(30006308-30006363)
chr1 (20-66)||(254830-254876)
chr1 (36-66)||(2458969-2458999)
chr1 (36-66)||(7375250-7375280)
chr1 (20-66)||(45377078-45377124)
chr1 (22-68)||(45749416-45749462)
chr1 (11-60)||(6332345-6332394)
chr1 (6-67)||(11066196-11066257)
chr1 (16-65)||(17919741-17919790)
chr1 (21-62)||(42650172-42650213)
chr1 (22-66)||(7213951-7213995)
chr1 (16-68)||(12851915-12851967)
chr1 (36-68)||(27720918-27720950)
chr1 (38-66)||(32807100-32807128)
chr1 (16-64)||(43358133-43358181)
[»] chr8 (36 HSPs)
chr8 (6-68)||(4530040-4530102)
chr8 (9-66)||(39463434-39463491)
chr8 (4-66)||(29025668-29025730)
chr8 (16-67)||(40228758-40228809)
chr8 (16-62)||(31899171-31899217)
chr8 (21-66)||(9022584-9022629)
chr8 (9-66)||(9304553-9304610)
chr8 (9-66)||(9880420-9880477)
chr8 (9-66)||(34168131-34168188)
chr8 (16-68)||(4760476-4760528)
chr8 (16-68)||(32326642-32326694)
chr8 (16-64)||(34461503-34461551)
chr8 (16-68)||(41415015-41415067)
chr8 (11-66)||(36915543-36915598)
chr8 (11-66)||(38328974-38329029)
chr8 (16-66)||(11168867-11168917)
chr8 (84-137)||(13765468-13765521)
chr8 (9-66)||(17921134-17921191)
chr8 (11-68)||(27109737-27109794)
chr8 (16-68)||(8382404-8382456)
chr8 (20-64)||(8471446-8471490)
chr8 (36-68)||(18673260-18673292)
chr8 (15-63)||(22601317-22601365)
chr8 (16-68)||(43448900-43448952)
chr8 (15-55)||(45187226-45187266)
chr8 (36-66)||(34168368-34168398)
chr8 (36-66)||(39463220-39463250)
chr8 (36-66)||(39698827-39698857)
chr8 (16-58)||(39970499-39970541)
chr8 (9-70)||(4989655-4989716)
chr8 (9-66)||(19438384-19438441)
chr8 (9-66)||(19574535-19574592)
chr8 (31-68)||(41790057-41790094)
chr8 (40-68)||(396142-396170)
chr8 (9-69)||(27416679-27416739)
chr8 (19-63)||(39698588-39698632)
[»] chr4 (49 HSPs)
chr4 (9-68)||(2728319-2728378)
chr4 (16-67)||(45889745-45889796)
chr4 (16-66)||(37654594-37654644)
chr4 (16-68)||(2493286-2493338)
chr4 (16-69)||(29519445-29519498)
chr4 (9-66)||(39984994-39985051)
chr4 (9-66)||(47321320-47321377)
chr4 (9-66)||(52957713-52957770)
chr4 (9-69)||(27653851-27653911)
chr4 (16-68)||(32140796-32140848)
chr4 (11-66)||(29840230-29840285)
chr4 (11-66)||(30492895-30492950)
chr4 (9-68)||(40010793-40010852)
chr4 (16-66)||(18430173-18430223)
chr4 (9-66)||(24941057-24941114)
chr4 (9-66)||(34124470-34124527)
chr4 (9-66)||(49080400-49080457)
chr4 (20-68)||(6462200-6462248)
chr4 (16-68)||(53814418-53814470)
chr4 (9-68)||(54042103-54042163)
chr4 (9-68)||(56373496-56373555)
chr4 (16-66)||(50623268-50623318)
chr4 (4-66)||(54233986-54234048)
chr4 (16-69)||(24259793-24259846)
chr4 (5-58)||(49089636-49089689)
chr4 (16-68)||(22212521-22212573)
chr4 (9-63)||(20448216-20448268)
chr4 (9-68)||(28116420-28116479)
chr4 (11-66)||(41920232-41920287)
chr4 (16-63)||(45043514-45043561)
chr4 (11-66)||(56556201-56556256)
chr4 (16-66)||(17499637-17499687)
chr4 (9-67)||(19282329-19282387)
chr4 (16-66)||(34316404-34316454)
chr4 (20-66)||(38991686-38991732)
chr4 (9-66)||(19878825-19878882)
chr4 (9-66)||(42605749-42605806)
chr4 (15-64)||(42672568-42672617)
chr4 (9-66)||(52847977-52848034)
chr4 (16-68)||(55126679-55126731)
chr4 (31-66)||(31941752-31941787)
chr4 (21-68)||(34096201-34096248)
chr4 (9-59)||(28734775-28734825)
chr4 (16-58)||(30022247-30022289)
chr4 (16-66)||(40345270-40345320)
chr4 (36-66)||(47817697-47817727)
chr4 (16-66)||(54092129-54092179)
chr4 (40-69)||(22220290-22220319)
chr4 (9-66)||(51434177-51434234)
[»] chr7 (46 HSPs)
chr7 (9-66)||(1742168-1742225)
chr7 (9-63)||(22298178-22298232)
chr7 (16-66)||(40299022-40299072)
chr7 (9-66)||(37815901-37815958)
chr7 (8-68)||(5723162-5723222)
chr7 (9-68)||(27935944-27936003)
chr7 (9-66)||(32345753-32345810)
chr7 (16-69)||(33056200-33056253)
chr7 (19-68)||(40207304-40207353)
chr7 (16-68)||(7795158-7795210)
chr7 (9-68)||(27947416-27947475)
chr7 (9-64)||(29530854-29530909)
chr7 (16-66)||(6522003-6522053)
chr7 (16-62)||(42121726-42121772)
chr7 (9-66)||(10599540-10599597)
chr7 (9-66)||(19906591-19906648)
chr7 (9-66)||(44453310-44453367)
chr7 (9-66)||(45933506-45933563)
chr7 (9-68)||(10684746-10684805)
chr7 (20-63)||(13405047-13405090)
chr7 (9-68)||(45948545-45948604)
chr7 (16-62)||(19276539-19276585)
chr7 (20-66)||(32275383-32275429)
chr7 (16-66)||(35778003-35778053)
chr7 (16-66)||(36836256-36836306)
chr7 (9-58)||(42879859-42879908)
chr7 (16-56)||(24680312-24680352)
chr7 (36-68)||(32345998-32346030)
chr7 (20-68)||(40339646-40339694)
chr7 (18-66)||(6389576-6389626)
chr7 (16-63)||(17869421-17869468)
chr7 (9-68)||(23155377-23155436)
chr7 (16-66)||(16564720-16564770)
chr7 (16-66)||(16600892-16600942)
chr7 (16-66)||(36915553-36915603)
chr7 (28-66)||(42043904-42043942)
chr7 (28-66)||(42259468-42259506)
chr7 (15-69)||(48838596-48838650)
chr7 (39-68)||(715789-715818)
chr7 (40-69)||(18270775-18270804)
chr7 (39-68)||(37502279-37502308)
chr7 (9-66)||(39117407-39117464)
chr7 (36-65)||(45499987-45500016)
chr7 (38-66)||(1741953-1741981)
chr7 (20-68)||(8334209-8334257)
chr7 (20-64)||(18733622-18733666)
[»] chr5 (47 HSPs)
chr5 (9-69)||(14620409-14620470)
chr5 (9-66)||(42103982-42104039)
chr5 (16-69)||(38982070-38982123)
chr5 (6-66)||(7145022-7145082)
chr5 (16-64)||(42661861-42661909)
chr5 (16-63)||(4751452-4751499)
chr5 (9-64)||(39730123-39730178)
chr5 (16-66)||(26660938-26660988)
chr5 (16-66)||(26932531-26932581)
chr5 (11-66)||(4371529-4371584)
chr5 (16-63)||(4742188-4742235)
chr5 (15-66)||(24436459-24436510)
chr5 (16-66)||(166568-166618)
chr5 (9-58)||(793531-793580)
chr5 (9-58)||(8336334-8336383)
chr5 (9-66)||(29807233-29807290)
chr5 (16-68)||(2729703-2729755)
chr5 (11-66)||(12167529-12167584)
chr5 (16-63)||(36660609-36660656)
chr5 (16-67)||(42329462-42329513)
chr5 (16-62)||(3305932-3305978)
chr5 (16-66)||(6519161-6519211)
chr5 (20-66)||(36783543-36783589)
chr5 (16-62)||(39566367-39566413)
chr5 (9-66)||(8960954-8961011)
chr5 (9-66)||(21375569-21375626)
chr5 (21-66)||(34972569-34972614)
chr5 (36-68)||(14620656-14620688)
chr5 (9-69)||(27652235-27652295)
chr5 (16-56)||(42978002-42978042)
chr5 (16-58)||(4833563-4833605)
chr5 (16-62)||(14006076-14006122)
chr5 (16-62)||(15567097-15567143)
chr5 (36-66)||(21375812-21375842)
chr5 (16-58)||(27600578-27600620)
chr5 (16-66)||(33693914-33693964)
chr5 (16-58)||(34445955-34445997)
chr5 (16-62)||(34919919-34919965)
chr5 (36-66)||(42104226-42104256)
chr5 (16-66)||(43257780-43257829)
chr5 (9-66)||(21375488-21375545)
chr5 (16-69)||(28798227-28798280)
chr5 (21-66)||(33822420-33822465)
chr5 (29-66)||(36296051-36296088)
chr5 (9-66)||(39335122-39335179)
chr5 (36-65)||(40330873-40330902)
chr5 (20-68)||(11977775-11977823)
[»] chr3 (62 HSPs)
chr3 (9-66)||(44676398-44676455)
chr3 (16-66)||(44648329-44648379)
chr3 (17-66)||(23525232-23525281)
chr3 (16-68)||(25061877-25061929)
chr3 (16-68)||(42791480-42791532)
chr3 (9-68)||(36729686-36729745)
chr3 (16-66)||(2458192-2458242)
chr3 (16-66)||(47895260-47895310)
chr3 (16-68)||(16240751-16240803)
chr3 (18-66)||(41287412-41287460)
chr3 (16-68)||(41850565-41850617)
chr3 (16-68)||(54933120-54933172)
chr3 (16-63)||(3152726-3152773)
chr3 (16-66)||(31290893-31290943)
chr3 (16-58)||(45213646-45213688)
chr3 (20-66)||(51398198-51398244)
chr3 (11-68)||(2567929-2567986)
chr3 (9-66)||(2988527-2988584)
chr3 (11-68)||(44854492-44854549)
chr3 (9-66)||(53560843-53560900)
chr3 (9-66)||(54261594-54261651)
chr3 (11-67)||(46362928-46362984)
chr3 (16-64)||(51381910-51381958)
chr3 (16-63)||(33193950-33193997)
chr3 (29-68)||(43736788-43736827)
chr3 (11-66)||(45095709-45095764)
chr3 (21-68)||(47138154-47138201)
chr3 (19-66)||(52222769-52222816)
chr3 (20-66)||(4392083-4392129)
chr3 (20-66)||(19373773-19373819)
chr3 (16-58)||(38277936-38277978)
chr3 (16-66)||(42857010-42857060)
chr3 (11-65)||(43580658-43580712)
chr3 (9-66)||(20512413-20512470)
chr3 (11-68)||(27027914-27027970)
chr3 (11-68)||(27039505-27039561)
chr3 (9-66)||(33024217-33024273)
chr3 (20-69)||(35099291-35099340)
chr3 (21-66)||(38363980-38364025)
chr3 (9-66)||(43687800-43687857)
chr3 (9-58)||(52201851-52201900)
chr3 (16-52)||(83479-83515)
chr3 (36-68)||(38016335-38016367)
chr3 (6-58)||(42940152-42940204)
chr3 (29-69)||(45566993-45567033)
chr3 (20-63)||(647514-647557)
chr3 (16-67)||(44645525-44645576)
chr3 (16-66)||(4476281-4476331)
chr3 (36-66)||(20512657-20512687)
chr3 (9-63)||(25722381-25722435)
chr3 (16-58)||(27483120-27483162)
chr3 (16-66)||(35557669-35557719)
chr3 (16-58)||(38165588-38165630)
chr3 (16-66)||(42740406-42740456)
chr3 (36-66)||(54261377-54261407)
chr3 (39-68)||(44645299-44645328)
chr3 (21-58)||(45391882-45391919)
chr3 (16-68)||(15514652-15514704)
chr3 (34-66)||(30186377-30186409)
chr3 (16-68)||(32303820-32303872)
chr3 (16-64)||(39359104-39359152)
chr3 (36-68)||(51397969-51398001)
[»] chr2 (36 HSPs)
chr2 (9-66)||(441150-441207)
chr2 (9-66)||(4133199-4133256)
chr2 (16-63)||(29396602-29396649)
chr2 (16-70)||(34225933-34225987)
chr2 (9-66)||(16807436-16807493)
chr2 (9-66)||(16846717-16846774)
chr2 (9-66)||(30855282-30855339)
chr2 (9-66)||(43388576-43388633)
chr2 (16-68)||(8774236-8774288)
chr2 (16-68)||(8789347-8789399)
chr2 (16-68)||(29808997-29809049)
chr2 (16-68)||(45081823-45081875)
chr2 (9-64)||(14698166-14698221)
chr2 (9-68)||(25383402-25383461)
chr2 (16-66)||(12342277-12342327)
chr2 (16-66)||(42970072-42970122)
chr2 (9-66)||(25332748-25332805)
chr2 (17-62)||(38809883-38809928)
chr2 (16-68)||(7743584-7743636)
chr2 (12-64)||(43480781-43480833)
chr2 (9-68)||(42005067-42005126)
chr2 (16-58)||(13562177-13562219)
chr2 (16-66)||(36106322-36106372)
chr2 (16-66)||(40987201-40987251)
chr2 (16-66)||(42753931-42753981)
chr2 (9-58)||(775811-775860)
chr2 (5-66)||(18717249-18717310)
chr2 (19-68)||(24775375-24775424)
chr2 (9-64)||(10580777-10580832)
chr2 (11-66)||(14378167-14378222)
chr2 (16-59)||(38926790-38926833)
chr2 (36-66)||(4132985-4133015)
chr2 (16-66)||(32227930-32227980)
chr2 (9-58)||(39866597-39866647)
chr2 (40-68)||(4840891-4840919)
chr2 (36-68)||(13561952-13561984)
[»] scaffold0565 (1 HSPs)
scaffold0565 (16-66)||(9579-9629)
[»] scaffold0048 (1 HSPs)
scaffold0048 (9-59)||(62810-62860)
[»] chr6 (16 HSPs)
chr6 (9-66)||(1135102-1135159)
chr6 (9-68)||(34513575-34513634)
chr6 (17-66)||(31275560-31275609)
chr6 (9-64)||(234202-234257)
chr6 (9-64)||(19675155-19675210)
chr6 (25-68)||(24163630-24163673)
chr6 (11-66)||(29713325-29713380)
chr6 (20-62)||(9940835-9940877)
chr6 (16-58)||(10520317-10520359)
chr6 (36-66)||(17246767-17246797)
chr6 (36-66)||(29927169-29927199)
chr6 (16-66)||(30627265-30627315)
chr6 (20-60)||(8052522-8052562)
chr6 (16-60)||(12828606-12828650)
chr6 (28-68)||(25932826-25932866)
chr6 (36-68)||(32429245-32429277)
[»] scaffold0110 (2 HSPs)
scaffold0110 (9-68)||(24657-24716)
scaffold0110 (36-68)||(24902-24934)
[»] scaffold0072 (1 HSPs)
scaffold0072 (11-66)||(12001-12056)
[»] scaffold0060 (1 HSPs)
scaffold0060 (16-66)||(31727-31777)
[»] scaffold0015 (1 HSPs)
scaffold0015 (9-66)||(21000-21057)
[»] scaffold0007 (1 HSPs)
scaffold0007 (16-69)||(158273-158325)
[»] scaffold0009 (1 HSPs)
scaffold0009 (6-58)||(62990-63042)
[»] scaffold0758 (1 HSPs)
scaffold0758 (16-66)||(6246-6296)
[»] scaffold0047 (1 HSPs)
scaffold0047 (36-66)||(70616-70646)
[»] scaffold0003 (1 HSPs)
scaffold0003 (9-62)||(321904-321957)
[»] scaffold2107 (1 HSPs)
scaffold2107 (36-68)||(674-706)


Alignment Details
Target: chr1 (Bit Score: 289; Significance: 1e-162; HSPs: 62)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 16 - 369
Target Start/End: Original strand, 5463759 - 5464113
Alignment:
Q  16 attccttaatatgtgtgcaattggctaaaacgacactcattttgaaacggatgagcatatatttgagggttttcttcaaatttatttatggaaatgcaaa 115  Q
    |||||||||||| |||||||||||||||| ||||||||||||||||||||||| |  |||||||||||||||||||||||||||||||||||||||||||    
T  5463759 attccttaatatatgtgcaattggctaaagcgacactcattttgaaacggatg-gagtatatttgagggttttcttcaaatttatttatggaaatgcaaa 5463857  T
Q  116 tctcgtaagaaattatcgacacgtggcatcttgatttgaatcaagttttccatgacat--gattttctgatcatgttattcaccggcgaagctaagaaga 213  Q
    ||||||||||||| |||||||||||||| |||||| ||||||||||||||||||||||  |||||||||||||||||||||||| | |||||||||||||    
T  5463858 tctcgtaagaaatgatcgacacgtggcaccttgatatgaatcaagttttccatgacatatgattttctgatcatgttattcaccagtgaagctaagaaga 5463957  T
Q  214 aatttggttataaaaaattgtgaaacacatgttactcacatgacatatgattttctgatcatgttattcgcatgacatatgattttatatacatagtcat 313  Q
    || |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5463958 aaattggttataaaaaaatgtgaaacacatgttactcacatgacatatgattttctgatcatgttattcgcatgacatatgattttatatacatagtcat 5464057  T
Q  314 gaaacacatgtattgatcatgttactcaaagtaatctactctttgagagatgaaca 369  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  5464058 gaaacacatgtattgatcatgttactcaaagtaatctaatctttgagagatgaaca 5464113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 11 - 66
Target Start/End: Complemental strand, 48259837 - 48259782
Alignment:
Q  11 attctattccttaatatgtgtgcaattggctaaaacgacactcattttgaaacgga 66  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  48259837 attctattccttaatctgtgtgcaattggctaaaacgacactcattttgaaacgga 48259782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 9 - 62
Target Start/End: Complemental strand, 11134436 - 11134383
Alignment:
Q  9 ttattctattccttaatatgtgtgcaattggctaaaacgacactcattttgaaa 62  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  11134436 ttattccattccttaatatgtgtgcaattggctaaaacgacactcattttgaaa 11134383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 16 - 66
Target Start/End: Original strand, 48009194 - 48009244
Alignment:
Q  16 attccttaatatgtgtgcaattggctaaaacgacactcattttgaaacgga 66  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  48009194 attccttaatatgtgtgcaattgactaaaacgacactcattttgaaacgga 48009244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 9 - 66
Target Start/End: Complemental strand, 5854200 - 5854143
Alignment:
Q  9 ttattctattccttaatatgtgtgcaattggctaaaacgacactcattttgaaacgga 66  Q
    ||||||||||||||||| ||||||||||||||||||  ||||||||||||||||||||    
T  5854200 ttattctattccttaatctgtgtgcaattggctaaagtgacactcattttgaaacgga 5854143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 11 - 68
Target Start/End: Complemental strand, 49426391 - 49426334
Alignment:
Q  11 attctattccttaatatgtgtgcaattggctaaaacgacactcattttgaaacggatg 68  Q
    |||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||    
T  49426391 attccattccttaatatgtgtgcaattgcctaaagcgacactcattttgaaacggatg 49426334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 16 - 68
Target Start/End: Original strand, 10842964 - 10843016
Alignment:
Q  16 attccttaatatgtgtgcaattggctaaaacgacactcattttgaaacggatg 68  Q
    |||||||||||| |||||||||| |||||||||||||||||||||||||||||    
T  10842964 attccttaatatttgtgcaattgactaaaacgacactcattttgaaacggatg 10843016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 16 - 63
Target Start/End: Complemental strand, 28751377 - 28751330
Alignment:
Q  16 attccttaatatgtgtgcaattggctaaaacgacactcattttgaaac 63  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||    
T  28751377 attccttaatctgtgtgcaattggctaaaacgacactcattttgaaac 28751330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 11 - 66
Target Start/End: Complemental strand, 48319979 - 48319924
Alignment:
Q  11 attctattccttaatatgtgtgcaattggctaaaacgacactcattttgaaacgga 66  Q
    |||| ||| ||||||||||||||||||||||||| |||||||||||||||||||||    
T  48319979 attccatttcttaatatgtgtgcaattggctaaagcgacactcattttgaaacgga 48319924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 16 - 61
Target Start/End: Original strand, 12002429 - 12002474
Alignment:
Q  16 attccttaatatgtgtgcaattggctaaaacgacactcattttgaa 61  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||    
T  12002429 attccttaatatgtgtgcaattgtctaaaacgacactcattttgaa 12002474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 9 - 66
Target Start/End: Complemental strand, 32806912 - 32806855
Alignment:
Q  9 ttattctattccttaatatgtgtgcaattggctaaaacgacactcattttgaaacgga 66  Q
    |||||| |||||||||||||||||||| |||||||| ||||| |||||||||||||||    
T  32806912 ttattccattccttaatatgtgtgcaactggctaaagcgacaatcattttgaaacgga 32806855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 9 - 66
Target Start/End: Original strand, 46046150 - 46046207
Alignment:
Q  9 ttattctattccttaatatgtgtgcaattggctaaaacgacactcattttgaaacgga 66  Q
    ||||| ||||||||||||| |||||||||||||||||||||| ||||| |||||||||    
T  46046150 ttattgtattccttaatatatgtgcaattggctaaaacgacattcattctgaaacgga 46046207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 9 - 62
Target Start/End: Complemental strand, 46286792 - 46286739
Alignment:
Q  9 ttattctattccttaatatgtgtgcaattggctaaaacgacactcattttgaaa 62  Q
    |||||||||| |||||||||||||||||||  ||||||||||||||||||||||    
T  46286792 ttattctatttcttaatatgtgtgcaattgattaaaacgacactcattttgaaa 46286739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 16 - 68
Target Start/End: Original strand, 44108785 - 44108837
Alignment:
Q  16 attccttaatatgtgtgcaattggctaaaacgacactcattttgaaacggatg 68  Q
    |||||||||||||||||||||||||||||  | ||||||||||||||||||||    
T  44108785 attccttaatatgtgtgcaattggctaaagtgtcactcattttgaaacggatg 44108837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 9 - 64
Target Start/End: Original strand, 15573790 - 15573845
Alignment:
Q  9 ttattctattccttaatatgtgtgcaattggctaaaacgacactcattttgaaacg 64  Q
    |||||| |||| ||||| |||||||||||||||||||||||| |||||||||||||    
T  15573790 ttattccattctttaatttgtgtgcaattggctaaaacgacattcattttgaaacg 15573845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 9 - 64
Target Start/End: Original strand, 15823211 - 15823266
Alignment:
Q  9 ttattctattccttaatatgtgtgcaattggctaaaacgacactcattttgaaacg 64  Q
    |||||| ||| ||||||||||||||||||||||||||||| ||||||||| |||||    
T  15823211 ttattccatttcttaatatgtgtgcaattggctaaaacgatactcattttaaaacg 15823266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 9 - 68
Target Start/End: Original strand, 49894958 - 49895017
Alignment:
Q  9 ttattctattccttaatatgtgtgcaattggctaaaacgacactcattttgaaacggatg 68  Q
    |||||| |||||||||| |||||||||||||| ||||||||||||||||| ||| |||||    
T  49894958 ttattccattccttaatctgtgtgcaattggccaaaacgacactcattttaaaatggatg 49895017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 4 - 66
Target Start/End: Complemental strand, 1740619 - 1740557
Alignment:
Q  4 gtacattattctattccttaatatgtgtgcaattggctaaaacgacactcattttgaaacgga 66  Q
    |||| |||||| |||| |||||||| ||| ||||||||||||||||| |||||||||||||||    
T  1740619 gtactttattccattctttaatatgcgtgtaattggctaaaacgacattcattttgaaacgga 1740557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 20 - 66
Target Start/End: Original strand, 2459193 - 2459239
Alignment:
Q  20 cttaatatgtgtgcaattggctaaaacgacactcattttgaaacgga 66  Q
    |||||| |||||||||||||||||| |||||||||||||||||||||    
T  2459193 cttaatctgtgtgcaattggctaaagcgacactcattttgaaacgga 2459239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 16 - 66
Target Start/End: Original strand, 9915628 - 9915678
Alignment:
Q  16 attccttaatatgtgtgcaattggctaaaacgacactcattttgaaacgga 66  Q
    |||||||||||||||||  ||| ||||||||||||||||||||||||||||    
T  9915628 attccttaatatgtgtgttattagctaaaacgacactcattttgaaacgga 9915678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 20 - 66
Target Start/End: Complemental strand, 13408299 - 13408253
Alignment:
Q  20 cttaatatgtgtgcaattggctaaaacgacactcattttgaaacgga 66  Q
    |||||| |||||||||||||||||||||||||||||||| |||||||    
T  13408299 cttaatttgtgtgcaattggctaaaacgacactcattttaaaacgga 13408253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 6 - 68
Target Start/End: Original strand, 30686808 - 30686870
Alignment:
Q  6 acattattctattccttaatatgtgtgcaattggctaaaacgacactcattttgaaacggatg 68  Q
    ||||||||| ||| |||||| ||||||||||| |||||||||||||||||||| |||| ||||    
T  30686808 acattattccatttcttaatctgtgtgcaattagctaaaacgacactcattttaaaacagatg 30686870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 16 - 62
Target Start/End: Complemental strand, 49468678 - 49468632
Alignment:
Q  16 attccttaatatgtgtgcaattggctaaaacgacactcattttgaaa 62  Q
    |||||||||| |||||||||||||||||| |||||||||||||||||    
T  49468678 attccttaatctgtgtgcaattggctaaagcgacactcattttgaaa 49468632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 11 - 68
Target Start/End: Complemental strand, 84492 - 84435
Alignment:
Q  11 attctattccttaatatgtgtgcaattggctaaaacgacactcattttgaaacggatg 68  Q
    |||| |||||||||| |||||||||||| ||||| |||||||||||||||||| ||||    
T  84492 attcaattccttaatctgtgtgcaattgactaaagcgacactcattttgaaacagatg 84435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 14 - 63
Target Start/End: Complemental strand, 17805815 - 17805766
Alignment:
Q  14 ctattccttaatatgtgtgcaattggctaaaacgacactcattttgaaac 63  Q
    |||||||||||| || ||||||||||||||| ||||||||||||||||||    
T  17805815 ctattccttaatctgcgtgcaattggctaaagcgacactcattttgaaac 17805766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 9 - 66
Target Start/End: Complemental strand, 28200198 - 28200141
Alignment:
Q  9 ttattctattccttaatatgtgtgcaattggctaaaacgacactcattttgaaacgga 66  Q
    |||||| ||| |||||| |||||||||||||||||| ||||||||||||| |||||||    
T  28200198 ttattcaatttcttaatctgtgtgcaattggctaaagcgacactcattttaaaacgga 28200141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 9 - 66
Target Start/End: Complemental strand, 31491744 - 31491687
Alignment:
Q  9 ttattctattccttaatatgtgtgcaattggctaaaacgacactcattttgaaacgga 66  Q
    |||||| |||||| ||||||| ||||||| |||||||||||||||||||| |||||||    
T  31491744 ttattccattcctgaatatgtttgcaatttgctaaaacgacactcattttaaaacgga 31491687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 20 - 69
Target Start/End: Complemental strand, 31699253 - 31699204
Alignment:
Q  20 cttaatatgtgtgcaattggctaaaacgacactcattttgaaacggatga 69  Q
    |||||||||||||||||||| |||||||||||||||||| ||||| ||||    
T  31699253 cttaatatgtgtgcaattggttaaaacgacactcattttaaaacgaatga 31699204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 69
Target Start/End: Original strand, 40719198 - 40719251
Alignment:
Q  16 attccttaatatgtgtgcaattggctaaaacgacactcattttgaaacggatga 69  Q
    |||||||||  |||||||||||||||||||||||||||||||  ||||||||||    
T  40719198 attccttaacttgtgtgcaattggctaaaacgacactcatttcaaaacggatga 40719251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 16 - 68
Target Start/End: Complemental strand, 37437372 - 37437321
Alignment:
Q  16 attccttaatatgtgtgcaattggctaaaacgacactcattttgaaacggatg 68  Q
    ||||||||||||||||||||| ||||||| ||||||||| |||||||||||||    
T  37437372 attccttaatatgtgtgcaatgggctaaagcgacactca-tttgaaacggatg 37437321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 16 - 63
Target Start/End: Complemental strand, 15647042 - 15646995
Alignment:
Q  16 attccttaatatgtgtgcaattggctaaaacgacactcattttgaaac 63  Q
    |||||||||| |||||||||||| ||||||||||||||||||| ||||    
T  15647042 attccttaatttgtgtgcaattgactaaaacgacactcattttaaaac 15646995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 15 - 62
Target Start/End: Complemental strand, 15698720 - 15698673
Alignment:
Q  15 tattccttaatatgtgtgcaattggctaaaacgacactcattttgaaa 62  Q
    ||||||||||| |||||||||||||||||||| ||||| |||||||||    
T  15698720 tattccttaatttgtgtgcaattggctaaaacaacacttattttgaaa 15698673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 9 - 68
Target Start/End: Complemental strand, 35847910 - 35847851
Alignment:
Q  9 ttattctattccttaatatgtgtgcaattggctaaaacgacactcattttgaaacggatg 68  Q
    |||||| |||||||||||||||||||||||  |||| ||||||||||||  |||||||||    
T  35847910 ttattcaattccttaatatgtgtgcaattgagtaaagcgacactcatttcaaaacggatg 35847851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 11 - 66
Target Start/End: Complemental strand, 50349831 - 50349776
Alignment:
Q  11 attctattccttaatatgtgtgcaattggctaaaacgacactcattttgaaacgga 66  Q
    |||| |||||||||| ||||| |||||||||||| | |||||||||||||||||||    
T  50349831 attccattccttaatttgtgttcaattggctaaagcaacactcattttgaaacgga 50349776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 9 - 64
Target Start/End: Complemental strand, 50591294 - 50591239
Alignment:
Q  9 ttattctattccttaatatgtgtgcaattggctaaaacgacactcattttgaaacg 64  Q
    |||||| |||||||||| ||||| |||||||||||| ||||||||||||| |||||    
T  50591294 ttattccattccttaatctgtgtacaattggctaaagcgacactcattttaaaacg 50591239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 66
Target Start/End: Complemental strand, 6377255 - 6377205
Alignment:
Q  16 attccttaatatgtgtgcaattggctaaaacgacactcattttgaaacgga 66  Q
    |||||||||| | |||||||||||||||| ||||||||||||| |||||||    
T  6377255 attccttaatttatgtgcaattggctaaagcgacactcattttaaaacgga 6377205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 66
Target Start/End: Original strand, 26252303 - 26252353
Alignment:
Q  16 attccttaatatgtgtgcaattggctaaaacgacactcattttgaaacgga 66  Q
    |||||||||| ||||||||||||| |||| | |||||||||||||||||||    
T  26252303 attccttaatctgtgtgcaattggttaaagcaacactcattttgaaacgga 26252353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 6 - 55
Target Start/End: Complemental strand, 29523239 - 29523190
Alignment:
Q  6 acattattctattccttaatatgtgtgcaattggctaaaacgacactcat 55  Q
    ||||||||  ||||||||||||||||||||||||||||||  ||||||||    
T  29523239 acattatttcattccttaatatgtgtgcaattggctaaaagaacactcat 29523190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 9 - 58
Target Start/End: Original strand, 50094407 - 50094456
Alignment:
Q  9 ttattctattccttaatatgtgtgcaattggctaaaacgacactcatttt 58  Q
    |||||| ||||||||||||| |||||||||| |||| |||||||||||||    
T  50094407 ttattcaattccttaatatgcgtgcaattggttaaagcgacactcatttt 50094456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 61
Target Start/End: Complemental strand, 672258 - 672206
Alignment:
Q  9 ttattctattccttaatatgtgtgcaattggctaaaacgacactcattttgaa 61  Q
    |||||| ||||  |||| ||||||||||||| |||||||||||||||||||||    
T  672258 ttattccattctataatctgtgtgcaattggttaaaacgacactcattttgaa 672206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 66
Target Start/End: Complemental strand, 4471386 - 4471326
Alignment:
Q  6 acattattctattccttaatatgtgtgcaattggctaaaacgacactcattttgaaacgga 66  Q
    ||||||||  ||| |||||| ||| |||||||| ||||| |||||||||||||||||||||    
T  4471386 acattatttcatttcttaatctgtatgcaattgactaaagcgacactcattttgaaacgga 4471326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 65
Target Start/End: Original strand, 22665113 - 22665169
Alignment:
Q  9 ttattctattccttaatatgtgtgcaattggctaaaacgacactcattttgaaacgg 65  Q
    |||||| |||| ||||| |||||||||||| ||||| ||||||||||||| ||||||    
T  22665113 ttattccattcgttaatctgtgtgcaattgactaaagcgacactcattttaaaacgg 22665169  T

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Target: chr1; HSP #43
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 69
Target Start/End: Original strand, 25151987 - 25152047
Alignment:
Q  9 ttattctattccttaatatgtgtgcaattggctaaaacgacactcattttgaaacggatga 69  Q
    ||||||||||| ||||| ||||||||||||| ||||  |||||| ||||||||||| ||||    
T  25151987 ttattctattctttaatctgtgtgcaattggttaaagtgacacttattttgaaacgaatga 25152047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 69
Target Start/End: Complemental strand, 40717336 - 40717276
Alignment:
Q  9 ttattctattccttaatatgtgtgcaattggctaaaacgacactcattttgaaacggatga 69  Q
    |||||| ||||| |||||||||||||||||  |||||||||||| ||||| ||| ||||||    
T  40717336 ttattccattccgtaatatgtgtgcaattgattaaaacgacacttattttaaaatggatga 40717276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #45
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 66
Target Start/End: Original strand, 43755216 - 43755260
Alignment:
Q  22 taatatgtgtgcaattggctaaaacgacactcattttgaaacgga 66  Q
    |||| |||||||||||||||||| ||||||||||||| |||||||    
T  43755216 taatctgtgtgcaattggctaaagcgacactcattttaaaacgga 43755260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #46
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 68
Target Start/End: Complemental strand, 52125099 - 52125051
Alignment:
Q  20 cttaatatgtgtgcaattggctaaaacgacactcattttgaaacggatg 68  Q
    |||| ||||| | |||||||||||||||||||||||||| |||||||||    
T  52125099 cttattatgtatacaattggctaaaacgacactcattttaaaacggatg 52125051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #47
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 36 - 67
Target Start/End: Complemental strand, 26755211 - 26755180
Alignment:
Q  36 ttggctaaaacgacactcattttgaaacggat 67  Q
    ||||||||||||||||||||||||||||||||    
T  26755211 ttggctaaaacgacactcattttgaaacggat 26755180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #48
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 11 - 66
Target Start/End: Original strand, 30006308 - 30006363
Alignment:
Q  11 attctattccttaatatgtgtgcaattggctaaaacgacactcattttgaaacgga 66  Q
    |||| |||| ||||| |||||||||||| ||||| ||||| |||||||||||||||    
T  30006308 attcaattcattaatctgtgtgcaattgactaaagcgacattcattttgaaacgga 30006363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #49
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 66
Target Start/End: Complemental strand, 254876 - 254830
Alignment:
Q  20 cttaatatgtgtgcaattggctaaaacgacactcattttgaaacgga 66  Q
    |||||| |||||| ||||| ||||| |||||||||||||||||||||    
T  254876 cttaatctgtgtgtaattgactaaagcgacactcattttgaaacgga 254830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #50
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 66
Target Start/End: Complemental strand, 2458999 - 2458969
Alignment:
Q  36 ttggctaaaacgacactcattttgaaacgga 66  Q
    |||||||||||||||||||||||||||||||    
T  2458999 ttggctaaaacgacactcattttgaaacgga 2458969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #51
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 66
Target Start/End: Complemental strand, 7375280 - 7375250
Alignment:
Q  36 ttggctaaaacgacactcattttgaaacgga 66  Q
    |||||||||||||||||||||||||||||||    
T  7375280 ttggctaaaacgacactcattttgaaacgga 7375250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #52
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 66
Target Start/End: Complemental strand, 45377124 - 45377078
Alignment:
Q  20 cttaatatgtgtgcaattggctaaaacgacactcattttgaaacgga 66  Q
    |||||| |||||| |||||| |||||||||| |||||||||||||||    
T  45377124 cttaatttgtgtgtaattggttaaaacgacaatcattttgaaacgga 45377078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #53
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 68
Target Start/End: Complemental strand, 45749462 - 45749416
Alignment:
Q  22 taatatgtgtgcaattggctaaaacgacactcattttgaaacggatg 68  Q
    |||||||||||||||| | |||| ||||||||||||| |||||||||    
T  45749462 taatatgtgtgcaattagttaaagcgacactcattttaaaacggatg 45749416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #54
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 60
Target Start/End: Original strand, 6332345 - 6332394
Alignment:
Q  11 attctattccttaatatgtgtgcaattggctaaaacgacactcattttga 60  Q
    |||| ||| |||||| ||||||||||||| |||| |||||||||||||||    
T  6332345 attcaatttcttaatttgtgtgcaattggttaaagcgacactcattttga 6332394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #55
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 67
Target Start/End: Original strand, 11066196 - 11066257
Alignment:
Q  6 acattattctattccttaatatgtgtgcaattggctaaaacgacactcattttgaaacggat 67  Q
    ||||||||  ||||||||||||| |||||||||  ||||  |||||||||||| ||||||||    
T  11066196 acattatttcattccttaatatgcgtgcaattgattaaagtgacactcattttaaaacggat 11066257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #56
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 65
Target Start/End: Complemental strand, 17919790 - 17919741
Alignment:
Q  16 attccttaatatgtgtgcaattggctaaaacgacactcattttgaaacgg 65  Q
    |||| ||||| ||| || ||||||||||| ||||||||||||||||||||    
T  17919790 attcattaatctgtatgtaattggctaaagcgacactcattttgaaacgg 17919741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #57
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 62
Target Start/End: Complemental strand, 42650213 - 42650172
Alignment:
Q  21 ttaatatgtgtgcaattggctaaaacgacactcattttgaaa 62  Q
    ||||| |||||||||||||||||| ||||| |||||||||||    
T  42650213 ttaatctgtgtgcaattggctaaagcgacattcattttgaaa 42650172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #58
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 66
Target Start/End: Complemental strand, 7213995 - 7213951
Alignment:
Q  22 taatatgtgtgcaattggctaaaacgacactcattttgaaacgga 66  Q
    ||||||||| | ||||| |||||| ||||||||||||||||||||    
T  7213995 taatatgtgcgtaattgactaaaaggacactcattttgaaacgga 7213951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #59
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 68
Target Start/End: Original strand, 12851915 - 12851967
Alignment:
Q  16 attccttaatatgtgtgcaattggctaaaacgacactcattttgaaacggatg 68  Q
    |||||||||| | |||| ||||||||||| ||||||| ||||| |||||||||    
T  12851915 attccttaatctttgtgtaattggctaaagcgacacttattttaaaacggatg 12851967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #60
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 36 - 68
Target Start/End: Complemental strand, 27720950 - 27720918
Alignment:
Q  36 ttggctaaaacgacactcattttgaaacggatg 68  Q
    ||||||||| |||||||||||||||||||||||    
T  27720950 ttggctaaagcgacactcattttgaaacggatg 27720918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #61
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 38 - 66
Target Start/End: Original strand, 32807100 - 32807128
Alignment:
Q  38 ggctaaaacgacactcattttgaaacgga 66  Q
    |||||||||||||||||||||||||||||    
T  32807100 ggctaaaacgacactcattttgaaacgga 32807128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #62
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 43358181 - 43358133
Alignment:
Q  16 attccttaatatgtgtgcaattggctaaaacgacactcattttgaaacg 64  Q
    |||||||||||| ||| |||||| ||||||||||| ||||||| |||||    
T  43358181 attccttaatatatgtacaattgactaaaacgacattcattttaaaacg 43358133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 2e-22; HSPs: 36)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 6 - 68
Target Start/End: Original strand, 4530040 - 4530102
Alignment:
Q  6 acattattctattccttaatatgtgtgcaattggctaaaacgacactcattttgaaacggatg 68  Q
    ||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||    
T  4530040 acattattctatttcttaatctgtgtgcaattggctaaaacgacactcattttgaaacggatg 4530102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 9 - 66
Target Start/End: Original strand, 39463434 - 39463491
Alignment:
Q  9 ttattctattccttaatatgtgtgcaattggctaaaacgacactcattttgaaacgga 66  Q
    |||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  39463434 ttattccattccttaatatgtgtgcaattggctaaagcgacactcattttgaaacgga 39463491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 4 - 66
Target Start/End: Complemental strand, 29025730 - 29025668
Alignment:
Q  4 gtacattattctattccttaatatgtgtgcaattggctaaaacgacactcattttgaaacgga 66  Q
    |||| ||||||||||||||||||||||||||||||  |||||||||||||||||||| |||||    
T  29025730 gtactttattctattccttaatatgtgtgcaattgattaaaacgacactcattttgatacgga 29025668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 16 - 67
Target Start/End: Original strand, 40228758 - 40228809
Alignment:
Q  16 attccttaatatgtgtgcaattggctaaaacgacactcattttgaaacggat 67  Q
    |||||||||||| |||||||||| |||||| |||||||||||||||||||||    
T  40228758 attccttaatatatgtgcaattgactaaaatgacactcattttgaaacggat 40228809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 16 - 62
Target Start/End: Complemental strand, 31899217 - 31899171
Alignment:
Q  16 attccttaatatgtgtgcaattggctaaaacgacactcattttgaaa 62  Q
    |||||||||||| |||||||||||||||| |||||||||||||||||    
T  31899217 attccttaatatatgtgcaattggctaaagcgacactcattttgaaa 31899171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 21 - 66
Target Start/End: Original strand, 9022584 - 9022629
Alignment:
Q  21 ttaatatgtgtgcaattggctaaaacgacactcattttgaaacgga 66  Q
    ||||| |||||||||||||||||||||||||||||||| |||||||    
T  9022584 ttaatctgtgtgcaattggctaaaacgacactcattttaaaacgga 9022629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 9 - 66
Target Start/End: Complemental strand, 9304610 - 9304553
Alignment:
Q  9 ttattctattccttaatatgtgtgcaattggctaaaacgacactcattttgaaacgga 66  Q
    |||||| ||| |||| ||||||||||||||||||||| |||||||||||| |||||||    
T  9304610 ttattcaatttcttattatgtgtgcaattggctaaaatgacactcattttaaaacgga 9304553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 9 - 66
Target Start/End: Complemental strand, 9880477 - 9880420
Alignment:
Q  9 ttattctattccttaatatgtgtgcaattggctaaaacgacactcattttgaaacgga 66  Q
    |||||| ||| |||||| ||||||||||||| |||| |||||||||||||||||||||    
T  9880477 ttattccatttcttaatctgtgtgcaattggttaaagcgacactcattttgaaacgga 9880420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 9 - 66
Target Start/End: Complemental strand, 34168188 - 34168131
Alignment:
Q  9 ttattctattccttaatatgtgtgcaattggctaaaacgacactcattttgaaacgga 66  Q
    |||||| ||||||||||  ||||| ||||||||||| |||||||||||||||||||||    
T  34168188 ttattcaattccttaatccgtgtgtaattggctaaagcgacactcattttgaaacgga 34168131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 16 - 68
Target Start/End: Complemental strand, 4760528 - 4760476
Alignment:
Q  16 attccttaatatgtgtgcaattggctaaaacgacactcattttgaaacggatg 68  Q
    |||||||||| | |||||||||||||||| ||||||||||||| |||||||||    
T  4760528 attccttaatctatgtgcaattggctaaagcgacactcattttaaaacggatg 4760476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 16 - 68
Target Start/End: Complemental strand, 32326694 - 32326642
Alignment:
Q  16 attccttaatatgtgtgcaattggctaaaacgacactcattttgaaacggatg 68  Q
    |||||||||| |||||||||||| ||||| ||||||||||||| |||||||||    
T  32326694 attccttaatctgtgtgcaattgactaaagcgacactcattttaaaacggatg 32326642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 34461551 - 34461503
Alignment:
Q  16 attccttaatatgtgtgcaattggctaaaacgacactcattttgaaacg 64  Q
    |||||||||| ||||| |||||||||||| |||||||||||||||||||    
T  34461551 attccttaatctgtgtacaattggctaaagcgacactcattttgaaacg 34461503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 16 - 68
Target Start/End: Original strand, 41415015 - 41415067
Alignment:
Q  16 attccttaatatgtgtgcaattggctaaaacgacactcattttgaaacggatg 68  Q
    |||||||||||| |||||||||||||||||||||| | ||||| |||||||||    
T  41415015 attccttaatatatgtgcaattggctaaaacgacatttattttaaaacggatg 41415067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 11 - 66
Target Start/End: Original strand, 36915543 - 36915598
Alignment:
Q  11 attctattccttaatatgtgtgcaattggctaaaacgacactcattttgaaacgga 66  Q
    |||| |||||||||| ||| ||||||||| |||||||||||||||||| |||||||    
T  36915543 attccattccttaatctgtatgcaattggttaaaacgacactcattttaaaacgga 36915598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 11 - 66
Target Start/End: Complemental strand, 38329029 - 38328974
Alignment:
Q  11 attctattccttaatatgtgtgcaattggctaaaacgacactcattttgaaacgga 66  Q
    |||| |||||||||| |||||||||||| ||||| ||| |||||||||||||||||    
T  38329029 attccattccttaatctgtgtgcaattgactaaagcgaaactcattttgaaacgga 38328974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 66
Target Start/End: Original strand, 11168867 - 11168917
Alignment:
Q  16 attccttaatatgtgtgcaattggctaaaacgacactcattttgaaacgga 66  Q
    |||||||||| |||||| || |||||||| |||||||||||||||||||||    
T  11168867 attccttaatctgtgtgaaaatggctaaagcgacactcattttgaaacgga 11168917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 84 - 137
Target Start/End: Complemental strand, 13765521 - 13765468
Alignment:
Q  84 gttttcttcaaatttatttatggaaatgcaaatctcgtaagaaattatcgacac 137  Q
    |||||| |||||| ||||||||||||||||||||||  ||||||| ||||||||    
T  13765521 gttttcctcaaatgtatttatggaaatgcaaatctcacaagaaatgatcgacac 13765468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 9 - 66
Target Start/End: Original strand, 17921134 - 17921191
Alignment:
Q  9 ttattctattccttaatatgtgtgcaattggctaaaacgacactcattttgaaacgga 66  Q
    |||||| |||||||||||||||||||||||||| || | ||| | |||||||||||||    
T  17921134 ttattcaattccttaatatgtgtgcaattggcttaagcaacattaattttgaaacgga 17921191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 11 - 68
Target Start/End: Complemental strand, 27109794 - 27109737
Alignment:
Q  11 attctattccttaatatgtgtgcaattggctaaaacgacactcattttgaaacggatg 68  Q
    |||||||| |||||||||||||| |    |||||||||||||||||||||||||||||    
T  27109794 attctatttcttaatatgtgtgccaacacctaaaacgacactcattttgaaacggatg 27109737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 68
Target Start/End: Complemental strand, 8382456 - 8382404
Alignment:
Q  16 attccttaatatgtgtgcaattggctaaaacgacactcattttgaaacggatg 68  Q
    |||| ||||| | ||||||||| |||||||||||||||||||| |||||||||    
T  8382456 attctttaatttatgtgcaattagctaaaacgacactcattttaaaacggatg 8382404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 64
Target Start/End: Original strand, 8471446 - 8471490
Alignment:
Q  20 cttaatatgtgtgcaattggctaaaacgacactcattttgaaacg 64  Q
    |||||| | |||||||||||||||| |||||||||||||||||||    
T  8471446 cttaatctatgtgcaattggctaaagcgacactcattttgaaacg 8471490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 68
Target Start/End: Original strand, 18673260 - 18673292
Alignment:
Q  36 ttggctaaaacgacactcattttgaaacggatg 68  Q
    |||||||||||||||||||||||||||||||||    
T  18673260 ttggctaaaacgacactcattttgaaacggatg 18673292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 63
Target Start/End: Original strand, 22601317 - 22601365
Alignment:
Q  15 tattccttaatatgtgtgcaattggctaaaacgacactcattttgaaac 63  Q
    ||||| ||||||||||| |||||||||||| ||||| ||||||||||||    
T  22601317 tattcattaatatgtgtacaattggctaaatcgacattcattttgaaac 22601365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 68
Target Start/End: Original strand, 43448900 - 43448952
Alignment:
Q  16 attccttaatatgtgtgcaattggctaaaacgacactcattttgaaacggatg 68  Q
    |||| |||||||||||| ||||| ||||| |||||| ||||||||||||||||    
T  43448900 attcattaatatgtgtgtaattgactaaagcgacacccattttgaaacggatg 43448952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 55
Target Start/End: Complemental strand, 45187266 - 45187226
Alignment:
Q  15 tattccttaatatgtgtgcaattggctaaaacgacactcat 55  Q
    ||||||||||| |||||||||||||||||| ||||||||||    
T  45187266 tattccttaatctgtgtgcaattggctaaagcgacactcat 45187226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 66
Target Start/End: Original strand, 34168368 - 34168398
Alignment:
Q  36 ttggctaaaacgacactcattttgaaacgga 66  Q
    |||||||||||||||||||||||||||||||    
T  34168368 ttggctaaaacgacactcattttgaaacgga 34168398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 66
Target Start/End: Complemental strand, 39463250 - 39463220
Alignment:
Q  36 ttggctaaaacgacactcattttgaaacgga 66  Q
    |||||||||||||||||||||||||||||||    
T  39463250 ttggctaaaacgacactcattttgaaacgga 39463220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 66
Target Start/End: Original strand, 39698827 - 39698857
Alignment:
Q  36 ttggctaaaacgacactcattttgaaacgga 66  Q
    |||||||||||||||||||||||||||||||    
T  39698827 ttggctaaaacgacactcattttgaaacgga 39698857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 58
Target Start/End: Original strand, 39970499 - 39970541
Alignment:
Q  16 attccttaatatgtgtgcaattggctaaaacgacactcatttt 58  Q
    |||| ||||| | ||||||||||||||||||||||||||||||    
T  39970499 attctttaatttatgtgcaattggctaaaacgacactcatttt 39970541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 70
Target Start/End: Original strand, 4989655 - 4989716
Alignment:
Q  9 ttattctattccttaatatgtgtgcaattggctaaaacgacactcattttgaaacggatgag 70  Q
    |||||| |||| ||||||||| ||||||||| |||| ||| ||||||||||||  |||||||    
T  4989655 ttattccattctttaatatgtatgcaattggttaaagcgaaactcattttgaacaggatgag 4989716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 66
Target Start/End: Original strand, 19438384 - 19438441
Alignment:
Q  9 ttattctattccttaatatgtgtgcaattggctaaaacgacactcattttgaaacgga 66  Q
    |||||| |||||||||| | |||||||||| ||||||| ||||  |||||||||||||    
T  19438384 ttattcaattccttaatctatgtgcaattgactaaaacaacacatattttgaaacgga 19438441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 66
Target Start/End: Original strand, 19574535 - 19574592
Alignment:
Q  9 ttattctattccttaatatgtgtgcaattggctaaaacgacactcattttgaaacgga 66  Q
    |||||| |||||||||| | |||||||||| ||||||| ||||  |||||||||||||    
T  19574535 ttattcaattccttaatctatgtgcaattgactaaaacaacacatattttgaaacgga 19574592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 68
Target Start/End: Complemental strand, 41790094 - 41790057
Alignment:
Q  31 tgcaattggctaaaacgacactcattttgaaacggatg 68  Q
    |||||||||||||||||||| | |||||||||||||||    
T  41790094 tgcaattggctaaaacgacatttattttgaaacggatg 41790057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 40 - 68
Target Start/End: Complemental strand, 396170 - 396142
Alignment:
Q  40 ctaaaacgacactcattttgaaacggatg 68  Q
    |||||||||||||||||||||||||||||    
T  396170 ctaaaacgacactcattttgaaacggatg 396142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 9 - 69
Target Start/End: Original strand, 27416679 - 27416739
Alignment:
Q  9 ttattctattccttaatatgtgtgcaattggctaaaacgacactcattttgaaacggatga 69  Q
    ||||| ||||||||||| || ||||||||| || || ||||||||||||  ||||||||||    
T  27416679 ttattatattccttaatctgcgtgcaattgactgaagcgacactcatttaaaaacggatga 27416739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 63
Target Start/End: Complemental strand, 39698632 - 39698588
Alignment:
Q  19 ccttaatatgtgtgcaattggctaaaacgacactcattttgaaac 63  Q
    |||||||||||||||||||| |||||  |||||||||||| ||||    
T  39698632 ccttaatatgtgtgcaattgcctaaagagacactcattttaaaac 39698588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 1e-20; HSPs: 49)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 9 - 68
Target Start/End: Complemental strand, 2728378 - 2728319
Alignment:
Q  9 ttattctattccttaatatgtgtgcaattggctaaaacgacactcattttgaaacggatg 68  Q
    |||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  2728378 ttattcaattccttaatatgtgtgcaattggctaaagcgacactcattttgaaacggatg 2728319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 16 - 67
Target Start/End: Original strand, 45889745 - 45889796
Alignment:
Q  16 attccttaatatgtgtgcaattggctaaaacgacactcattttgaaacggat 67  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45889745 attccttaatatgtgtgcaattggctaaaacgacactcattttgaaacggat 45889796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 16 - 66
Target Start/End: Original strand, 37654594 - 37654644
Alignment:
Q  16 attccttaatatgtgtgcaattggctaaaacgacactcattttgaaacgga 66  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37654594 attccttaatatgtgtgcaattggctaaaacgacactcattttgaaacgga 37654644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 16 - 68
Target Start/End: Original strand, 2493286 - 2493338
Alignment:
Q  16 attccttaatatgtgtgcaattggctaaaacgacactcattttgaaacggatg 68  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  2493286 attccttaatatgtgtgcaattggcaaaaacgacactcattttgaaacggatg 2493338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 16 - 69
Target Start/End: Complemental strand, 29519498 - 29519445
Alignment:
Q  16 attccttaatatgtgtgcaattggctaaaacgacactcattttgaaacggatga 69  Q
    ||||||||||||||||| ||||||||||||||||||||||||| ||||||||||    
T  29519498 attccttaatatgtgtgtaattggctaaaacgacactcattttaaaacggatga 29519445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 9 - 66
Target Start/End: Original strand, 39984994 - 39985051
Alignment:
Q  9 ttattctattccttaatatgtgtgcaattggctaaaacgacactcattttgaaacgga 66  Q
    |||||| |||||||||||||| |||||||||||||| |||||||||||||||||||||    
T  39984994 ttattcaattccttaatatgtatgcaattggctaaagcgacactcattttgaaacgga 39985051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 9 - 66
Target Start/End: Original strand, 47321320 - 47321377
Alignment:
Q  9 ttattctattccttaatatgtgtgcaattggctaaaacgacactcattttgaaacgga 66  Q
    |||||| |||||||||| |||||||||||||||||||||||||||||||| |||||||    
T  47321320 ttattcaattccttaatctgtgtgcaattggctaaaacgacactcattttaaaacgga 47321377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 9 - 66
Target Start/End: Complemental strand, 52957770 - 52957713
Alignment:
Q  9 ttattctattccttaatatgtgtgcaattggctaaaacgacactcattttgaaacgga 66  Q
    |||||| |||||||||| |||||||||||||||||| |||||||||||||||||||||    
T  52957770 ttattccattccttaatctgtgtgcaattggctaaagcgacactcattttgaaacgga 52957713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 9 - 69
Target Start/End: Original strand, 27653851 - 27653911
Alignment:
Q  9 ttattctattccttaatatgtgtgcaattggctaaaacgacactcattttgaaacggatga 69  Q
    |||||| |||||||||| |||||||||||||||||| |||||||||||||||||| |||||    
T  27653851 ttattccattccttaatttgtgtgcaattggctaaagcgacactcattttgaaacagatga 27653911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 16 - 68
Target Start/End: Complemental strand, 32140848 - 32140796
Alignment:
Q  16 attccttaatatgtgtgcaattggctaaaacgacactcattttgaaacggatg 68  Q
    |||||||||| |||||||||||| |||||||||||||||||||||||||||||    
T  32140848 attccttaatttgtgtgcaattgactaaaacgacactcattttgaaacggatg 32140796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 11 - 66
Target Start/End: Original strand, 29840230 - 29840285
Alignment:
Q  11 attctattccttaatatgtgtgcaattggctaaaacgacactcattttgaaacgga 66  Q
    |||| |||||||||| ||||||||||||| ||||||||||||||||||||||||||    
T  29840230 attccattccttaatttgtgtgcaattgggtaaaacgacactcattttgaaacgga 29840285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 11 - 66
Target Start/End: Original strand, 30492895 - 30492950
Alignment:
Q  11 attctattccttaatatgtgtgcaattggctaaaacgacactcattttgaaacgga 66  Q
    |||| |||||||||| |||||||||||||||||||| |||||||||||||||||||    
T  30492895 attccattccttaatttgtgtgcaattggctaaaaccacactcattttgaaacgga 30492950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 9 - 68
Target Start/End: Complemental strand, 40010852 - 40010793
Alignment:
Q  9 ttattctattccttaatatgtgtgcaattggctaaaacgacactcattttgaaacggatg 68  Q
    |||||| ||||||||||||||||| ||| | |||||||||||||||||||||||||||||    
T  40010852 ttattccattccttaatatgtgtgtaatggactaaaacgacactcattttgaaacggatg 40010793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 66
Target Start/End: Original strand, 18430173 - 18430223
Alignment:
Q  16 attccttaatatgtgtgcaattggctaaaacgacactcattttgaaacgga 66  Q
    ||||||||||||||||||||||||||||| | |||||||||||||||||||    
T  18430173 attccttaatatgtgtgcaattggctaaagcaacactcattttgaaacgga 18430223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 9 - 66
Target Start/End: Original strand, 24941057 - 24941114
Alignment:
Q  9 ttattctattccttaatatgtgtgcaattggctaaaacgacactcattttgaaacgga 66  Q
    |||||| |||| |||| |||||||||||||| ||||||||||||||||||||||||||    
T  24941057 ttattccattctttaacatgtgtgcaattggttaaaacgacactcattttgaaacgga 24941114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 9 - 66
Target Start/End: Original strand, 34124470 - 34124527
Alignment:
Q  9 ttattctattccttaatatgtgtgcaattggctaaaacgacactcattttgaaacgga 66  Q
    |||||| ||| |||||| |||||||||||||||||| |||||||||||||||||||||    
T  34124470 ttattcaatttcttaatctgtgtgcaattggctaaagcgacactcattttgaaacgga 34124527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 9 - 66
Target Start/End: Complemental strand, 49080457 - 49080400
Alignment:
Q  9 ttattctattccttaatatgtgtgcaattggctaaaacgacactcattttgaaacgga 66  Q
    ||||| ||||||||||||||||||||||||| |||| ||||||| |||||||||||||    
T  49080457 ttattttattccttaatatgtgtgcaattggataaagcgacacttattttgaaacgga 49080400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 20 - 68
Target Start/End: Original strand, 6462200 - 6462248
Alignment:
Q  20 cttaatatgtgtgcaattggctaaaacgacactcattttgaaacggatg 68  Q
    |||||| ||||||||||||||||||||||| ||||||||||||||||||    
T  6462200 cttaatctgtgtgcaattggctaaaacgaccctcattttgaaacggatg 6462248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 16 - 68
Target Start/End: Complemental strand, 53814470 - 53814418
Alignment:
Q  16 attccttaatatgtgtgcaattggctaaaacgacactcattttgaaacggatg 68  Q
    |||||||||||||||||| ||||| |||||||||||||||||| |||||||||    
T  53814470 attccttaatatgtgtgcgattggttaaaacgacactcattttaaaacggatg 53814418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 9 - 68
Target Start/End: Complemental strand, 54042163 - 54042103
Alignment:
Q  9 ttattctattccttaat-atgtgtgcaattggctaaaacgacactcattttgaaacggatg 68  Q
    |||||| ||| |||||| ||||||||||||||||||||||||||||||||| |||||||||    
T  54042163 ttattccatttcttaattatgtgtgcaattggctaaaacgacactcattttaaaacggatg 54042103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 9 - 68
Target Start/End: Complemental strand, 56373555 - 56373496
Alignment:
Q  9 ttattctattccttaatatgtgtgcaattggctaaaacgacactcattttgaaacggatg 68  Q
    |||||| |||||||||||||| | ||||||||||||  ||||||||||||||||||||||    
T  56373555 ttattccattccttaatatgtcttcaattggctaaagtgacactcattttgaaacggatg 56373496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 16 - 66
Target Start/End: Original strand, 50623268 - 50623318
Alignment:
Q  16 attccttaatatgtgtgcaattggctaaaacgacactcattttgaaacgga 66  Q
    ||||||||||||||||| ||||| ||||||||||||||||||| |||||||    
T  50623268 attccttaatatgtgtgtaattgactaaaacgacactcattttaaaacgga 50623318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 4 - 66
Target Start/End: Original strand, 54233986 - 54234048
Alignment:
Q  4 gtacattattctattccttaatatgtgtgcaattggctaaaacgacactcattttgaaacgga 66  Q
    |||| |||||| ||| |||||| ||| |||||||||||||| |||||||||||||||||||||    
T  54233986 gtactttattccatttcttaatttgtatgcaattggctaaagcgacactcattttgaaacgga 54234048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 69
Target Start/End: Original strand, 24259793 - 24259846
Alignment:
Q  16 attccttaatatgtgtgcaattggctaaaacgacactcattttgaaacggatga 69  Q
    |||||||||||| ||||||||||| |||| ||||||||||||| ||||||||||    
T  24259793 attccttaatatatgtgcaattggataaagcgacactcattttaaaacggatga 24259846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 5 - 58
Target Start/End: Original strand, 49089636 - 49089689
Alignment:
Q  5 tacattattctattccttaatatgtgtgcaattggctaaaacgacactcatttt 58  Q
    |||||||||  |||||||||||||||||||||||  ||||||||||||||||||    
T  49089636 tacattatttcattccttaatatgtgtgcaattgattaaaacgacactcatttt 49089689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 16 - 68
Target Start/End: Original strand, 22212521 - 22212573
Alignment:
Q  16 attccttaatatgtgtgcaattggctaaaacgacactcattttgaaacggatg 68  Q
    |||||||||||||||| |||||||||||| |||||| |||||| |||||||||    
T  22212521 attccttaatatgtgttcaattggctaaagcgacacccattttaaaacggatg 22212573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 9 - 63
Target Start/End: Original strand, 20448216 - 20448268
Alignment:
Q  9 ttattctattccttaatatgtgtgcaattggctaaaacgacactcattttgaaac 63  Q
    |||||| ||||||||||||||||||||||||||||| |||||  |||||||||||    
T  20448216 ttattcaattccttaatatgtgtgcaattggctaaagcgaca--cattttgaaac 20448268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 9 - 68
Target Start/End: Original strand, 28116420 - 28116479
Alignment:
Q  9 ttattctattccttaatatgtgtgcaattggctaaaacgacactcattttgaaacggatg 68  Q
    |||||| ||||||||||  |||||||||||| ||||  ||||||||||||||||||||||    
T  28116420 ttattccattccttaatccgtgtgcaattggttaaagtgacactcattttgaaacggatg 28116479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 11 - 66
Target Start/End: Complemental strand, 41920287 - 41920232
Alignment:
Q  11 attctattccttaatatgtgtgcaattggctaaaacgacactcattttgaaacgga 66  Q
    |||| |||| ||||||||||||||||| ||||||| |||||| |||||||||||||    
T  41920287 attccattctttaatatgtgtgcaattagctaaaatgacacttattttgaaacgga 41920232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 16 - 63
Target Start/End: Complemental strand, 45043561 - 45043514
Alignment:
Q  16 attccttaatatgtgtgcaattggctaaaacgacactcattttgaaac 63  Q
    ||||||||| ||||||||||||| ||||||||||||| ||||||||||    
T  45043561 attccttaaaatgtgtgcaattgactaaaacgacacttattttgaaac 45043514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 11 - 66
Target Start/End: Complemental strand, 56556256 - 56556201
Alignment:
Q  11 attctattccttaatatgtgtgcaattggctaaaacgacactcattttgaaacgga 66  Q
    |||| |||||||||| ||||||||||||| |||| ||||||||||||| |||||||    
T  56556256 attcaattccttaatctgtgtgcaattggttaaagcgacactcattttaaaacgga 56556201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 66
Target Start/End: Complemental strand, 17499687 - 17499637
Alignment:
Q  16 attccttaatatgtgtgcaattggctaaaacgacactcattttgaaacgga 66  Q
    |||| ||||| |||||||||||| ||||||||||||||||||| |||||||    
T  17499687 attcattaatctgtgtgcaattgactaaaacgacactcattttaaaacgga 17499637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 9 - 67
Target Start/End: Complemental strand, 19282387 - 19282329
Alignment:
Q  9 ttattctattccttaatatgtgtgcaattggctaaaacgacactcattttgaaacggat 67  Q
    |||||| ||||||||||  ||||||||||||||||| |||| |||||||| ||||||||    
T  19282387 ttattccattccttaatccgtgtgcaattggctaaagcgacgctcattttaaaacggat 19282329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 66
Target Start/End: Original strand, 34316404 - 34316454
Alignment:
Q  16 attccttaatatgtgtgcaattggctaaaacgacactcattttgaaacgga 66  Q
    |||||||||| ||||||||||||| ||||  ||||||||||||||||||||    
T  34316404 attccttaatctgtgtgcaattggttaaagtgacactcattttgaaacgga 34316454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 66
Target Start/End: Complemental strand, 38991732 - 38991686
Alignment:
Q  20 cttaatatgtgtgcaattggctaaaacgacactcattttgaaacgga 66  Q
    |||||| |||||||||||| ||||||||||||||||||| |||||||    
T  38991732 cttaatctgtgtgcaattgactaaaacgacactcattttaaaacgga 38991686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 9 - 66
Target Start/End: Original strand, 19878825 - 19878882
Alignment:
Q  9 ttattctattccttaatatgtgtgcaattggctaaaacgacactcattttgaaacgga 66  Q
    |||||| |||||||||| | || ||||||||||||| ||||| |||||||||||||||    
T  19878825 ttattccattccttaatctctgcgcaattggctaaagcgacattcattttgaaacgga 19878882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 9 - 66
Target Start/End: Original strand, 42605749 - 42605806
Alignment:
Q  9 ttattctattccttaatatgtgtgcaattggctaaaacgacactcattttgaaacgga 66  Q
    ||||| ||||| ||||| |||||||||||| |||||||||| |||||||| |||||||    
T  42605749 ttattttattctttaatctgtgtgcaattgactaaaacgacgctcattttaaaacgga 42605806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 15 - 64
Target Start/End: Original strand, 42672568 - 42672617
Alignment:
Q  15 tattccttaatatgtgtgcaattggctaaaacgacactcattttgaaacg 64  Q
    ||||||||||| |||||||||||| |||||  ||||||||||||||||||    
T  42672568 tattccttaatttgtgtgcaattgactaaattgacactcattttgaaacg 42672617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 9 - 66
Target Start/End: Complemental strand, 52848034 - 52847977
Alignment:
Q  9 ttattctattccttaatatgtgtgcaattggctaaaacgacactcattttgaaacgga 66  Q
    |||||| ||| |||||| ||| |||||||||||||||| ||||||||||| |||||||    
T  52848034 ttattcaatttcttaatctgtatgcaattggctaaaacaacactcattttaaaacgga 52847977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 68
Target Start/End: Original strand, 55126679 - 55126731
Alignment:
Q  16 attccttaatatgtgtgcaattggctaaaacgacactcattttgaaacggatg 68  Q
    ||||||||||   |||||||||||||||||||||| ||||||| |||||||||    
T  55126679 attccttaatcaatgtgcaattggctaaaacgacattcattttaaaacggatg 55126731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 31 - 66
Target Start/End: Original strand, 31941752 - 31941787
Alignment:
Q  31 tgcaattggctaaaacgacactcattttgaaacgga 66  Q
    |||||||||||||| |||||||||||||||||||||    
T  31941752 tgcaattggctaaagcgacactcattttgaaacgga 31941787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 21 - 68
Target Start/End: Original strand, 34096201 - 34096248
Alignment:
Q  21 ttaatatgtgtgcaattggctaaaacgacactcattttgaaacggatg 68  Q
    ||||| |||||||||||| |||||||||||||||| || |||||||||    
T  34096201 ttaatttgtgtgcaattgcctaaaacgacactcatcttaaaacggatg 34096248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 59
Target Start/End: Original strand, 28734775 - 28734825
Alignment:
Q  9 ttattctattccttaatatgtgtgcaattggctaaaacgacactcattttg 59  Q
    |||||| |||| ||||||| ||||||||||| |||| ||||||||||||||    
T  28734775 ttattcaattctttaatatatgtgcaattggttaaagcgacactcattttg 28734825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 58
Target Start/End: Original strand, 30022247 - 30022289
Alignment:
Q  16 attccttaatatgtgtgcaattggctaaaacgacactcatttt 58  Q
    |||||||||| | ||||||||| ||||||||||||||||||||    
T  30022247 attccttaatctatgtgcaatttgctaaaacgacactcatttt 30022289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 66
Target Start/End: Complemental strand, 40345320 - 40345270
Alignment:
Q  16 attccttaatatgtgtgcaattggctaaaacgacactcattttgaaacgga 66  Q
    |||| ||||| |||||||||||||||||| ||||| ||||||| |||||||    
T  40345320 attcattaatttgtgtgcaattggctaaagcgacattcattttaaaacgga 40345270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 66
Target Start/End: Complemental strand, 47817727 - 47817697
Alignment:
Q  36 ttggctaaaacgacactcattttgaaacgga 66  Q
    |||||||||||||||||||||||||||||||    
T  47817727 ttggctaaaacgacactcattttgaaacgga 47817697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 66
Target Start/End: Original strand, 54092129 - 54092179
Alignment:
Q  16 attccttaatatgtgtgcaattggctaaaacgacactcattttgaaacgga 66  Q
    |||||||||| ||| ||||||||  |||||||||||||||||| |||||||    
T  54092129 attccttaatttgtatgcaattgattaaaacgacactcattttaaaacgga 54092179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #48
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 69
Target Start/End: Complemental strand, 22220319 - 22220290
Alignment:
Q  40 ctaaaacgacactcattttgaaacggatga 69  Q
    ||||||||||||||||||||||||||||||    
T  22220319 ctaaaacgacactcattttgaaacggatga 22220290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #49
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 66
Target Start/End: Complemental strand, 51434234 - 51434177
Alignment:
Q  9 ttattctattccttaatatgtgtgcaattggctaaaacgacactcattttgaaacgga 66  Q
    |||||| |||||||||||| | ||||||||| |||| ||||| ||||||| |||||||    
T  51434234 ttattccattccttaatatatatgcaattggttaaagcgacattcattttaaaacgga 51434177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 2e-19; HSPs: 46)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 9 - 66
Target Start/End: Original strand, 1742168 - 1742225
Alignment:
Q  9 ttattctattccttaatatgtgtgcaattggctaaaacgacactcattttgaaacgga 66  Q
    |||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  1742168 ttattccattccttaatatgtgtgcaattggctaaagcgacactcattttgaaacgga 1742225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 9 - 63
Target Start/End: Original strand, 22298178 - 22298232
Alignment:
Q  9 ttattctattccttaatatgtgtgcaattggctaaaacgacactcattttgaaac 63  Q
    |||||| |||||||||| |||||||||||||||||||||||||||||||||||||    
T  22298178 ttattccattccttaatctgtgtgcaattggctaaaacgacactcattttgaaac 22298232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 16 - 66
Target Start/End: Original strand, 40299022 - 40299072
Alignment:
Q  16 attccttaatatgtgtgcaattggctaaaacgacactcattttgaaacgga 66  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  40299022 attccttaatttgtgtgcaattggctaaaacgacactcattttgaaacgga 40299072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 9 - 66
Target Start/End: Original strand, 37815901 - 37815958
Alignment:
Q  9 ttattctattccttaatatgtgtgcaattggctaaaacgacactcattttgaaacgga 66  Q
    |||||| |||| |||||||||||||||||||||||||||||||||||||| |||||||    
T  37815901 ttattccattctttaatatgtgtgcaattggctaaaacgacactcattttaaaacgga 37815958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 8 - 68
Target Start/End: Original strand, 5723162 - 5723222
Alignment:
Q  8 attattctattccttaatatgtgtgcaattggctaaaacgacactcattttgaaacggatg 68  Q
    |||||| ||||||||||| |||||||||||| ||||||||||||||||||| |||||||||    
T  5723162 attattttattccttaatttgtgtgcaattgactaaaacgacactcattttaaaacggatg 5723222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 9 - 68
Target Start/End: Original strand, 27935944 - 27936003
Alignment:
Q  9 ttattctattccttaatatgtgtgcaattggctaaaacgacactcattttgaaacggatg 68  Q
    |||||| |||||||||| |||||||| ||||||||| |||||||||||||||||||||||    
T  27935944 ttattcaattccttaatctgtgtgcagttggctaaagcgacactcattttgaaacggatg 27936003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 9 - 66
Target Start/End: Complemental strand, 32345810 - 32345753
Alignment:
Q  9 ttattctattccttaatatgtgtgcaattggctaaaacgacactcattttgaaacgga 66  Q
    |||||| ||| |||||| |||||||||||||||||| |||||||||||||||||||||    
T  32345810 ttattcaatttcttaatctgtgtgcaattggctaaagcgacactcattttgaaacgga 32345753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 16 - 69
Target Start/End: Complemental strand, 33056253 - 33056200
Alignment:
Q  16 attccttaatatgtgtgcaattggctaaaacgacactcattttgaaacggatga 69  Q
    |||||||||| | |||||||||| ||||||||||||||||||||||||||||||    
T  33056253 attccttaatctatgtgcaattgactaaaacgacactcattttgaaacggatga 33056200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 19 - 68
Target Start/End: Complemental strand, 40207353 - 40207304
Alignment:
Q  19 ccttaatatgtgtgcaattggctaaaacgacactcattttgaaacggatg 68  Q
    |||||||||||||||||||||||||| | |||||||||||||||||||||    
T  40207353 ccttaatatgtgtgcaattggctaaagcaacactcattttgaaacggatg 40207304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 16 - 68
Target Start/End: Complemental strand, 7795210 - 7795158
Alignment:
Q  16 attccttaatatgtgtgcaattggctaaaacgacactcattttgaaacggatg 68  Q
    |||||||||| ||||| |||||||||||| |||||||||||||||||||||||    
T  7795210 attccttaatttgtgtacaattggctaaagcgacactcattttgaaacggatg 7795158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 9 - 68
Target Start/End: Complemental strand, 27947475 - 27947416
Alignment:
Q  9 ttattctattccttaatatgtgtgcaattggctaaaacgacactcattttgaaacggatg 68  Q
    |||||| |||| ||||||||||||||||||| ||||  ||||||||||||||||||||||    
T  27947475 ttattcaattcattaatatgtgtgcaattggttaaagtgacactcattttgaaacggatg 27947416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 9 - 64
Target Start/End: Complemental strand, 29530909 - 29530854
Alignment:
Q  9 ttattctattccttaatatgtgtgcaattggctaaaacgacactcattttgaaacg 64  Q
    ||||| ||||||||||| |||||||||||||||||| ||||||||||||| |||||    
T  29530909 ttattttattccttaatctgtgtgcaattggctaaatcgacactcattttaaaacg 29530854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 16 - 66
Target Start/End: Original strand, 6522003 - 6522053
Alignment:
Q  16 attccttaatatgtgtgcaattggctaaaacgacactcattttgaaacgga 66  Q
    |||||||||| |||||||||||||||||| ||||||||||||| |||||||    
T  6522003 attccttaatttgtgtgcaattggctaaagcgacactcattttaaaacgga 6522053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 16 - 62
Target Start/End: Original strand, 42121726 - 42121772
Alignment:
Q  16 attccttaatatgtgtgcaattggctaaaacgacactcattttgaaa 62  Q
    |||||||||| |||||||||||||||||| |||||||||||||||||    
T  42121726 attccttaatctgtgtgcaattggctaaagcgacactcattttgaaa 42121772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 9 - 66
Target Start/End: Original strand, 10599540 - 10599597
Alignment:
Q  9 ttattctattccttaatatgtgtgcaattggctaaaacgacactcattttgaaacgga 66  Q
    |||||| |||||||||||| ||||||||||  |||||||||||||||||| |||||||    
T  10599540 ttattccattccttaatatatgtgcaattgattaaaacgacactcattttaaaacgga 10599597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 9 - 66
Target Start/End: Original strand, 19906591 - 19906648
Alignment:
Q  9 ttattctattccttaatatgtgtgcaattggctaaaacgacactcattttgaaacgga 66  Q
    |||||| ||||||||||   |||||||||||||||| |||||||||||||||||||||    
T  19906591 ttattccattccttaatccatgtgcaattggctaaagcgacactcattttgaaacgga 19906648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 9 - 66
Target Start/End: Original strand, 44453310 - 44453367
Alignment:
Q  9 ttattctattccttaatatgtgtgcaattggctaaaacgacactcattttgaaacgga 66  Q
    |||||| |||| ||||| ||| |||||||||||||||||||||||||||| |||||||    
T  44453310 ttattccattctttaatctgtatgcaattggctaaaacgacactcattttaaaacgga 44453367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 9 - 66
Target Start/End: Complemental strand, 45933563 - 45933506
Alignment:
Q  9 ttattctattccttaatatgtgtgcaattggctaaaacgacactcattttgaaacgga 66  Q
    |||||| |||||||||| ||||||||| |||||||| ||||||||||||| |||||||    
T  45933563 ttattcaattccttaatctgtgtgcaagtggctaaagcgacactcattttaaaacgga 45933506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 9 - 68
Target Start/End: Complemental strand, 10684805 - 10684746
Alignment:
Q  9 ttattctattccttaatatgtgtgcaattggctaaaacgacactcattttgaaacggatg 68  Q
    ||||| ||||||||||||| |||| |||||  |||||||||||| |||||||||||||||    
T  10684805 ttattttattccttaatatatgtgtaattgattaaaacgacacttattttgaaacggatg 10684746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 20 - 63
Target Start/End: Complemental strand, 13405090 - 13405047
Alignment:
Q  20 cttaatatgtgtgcaattggctaaaacgacactcattttgaaac 63  Q
    |||||||||||||||||||| |||||||||||||||||| ||||    
T  13405090 cttaatatgtgtgcaattggttaaaacgacactcattttaaaac 13405047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 9 - 68
Target Start/End: Complemental strand, 45948604 - 45948545
Alignment:
Q  9 ttattctattccttaatatgtgtgcaattggctaaaacgacactcattttgaaacggatg 68  Q
    |||||||||| | |||||||||||  |||| ||||||||||||||||||| |||||||||    
T  45948604 ttattctatttcgtaatatgtgtgtgattgactaaaacgacactcattttaaaacggatg 45948545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 62
Target Start/End: Complemental strand, 19276585 - 19276539
Alignment:
Q  16 attccttaatatgtgtgcaattggctaaaacgacactcattttgaaa 62  Q
    |||||||||| |||||||||||||||||| ||||||| |||||||||    
T  19276585 attccttaatctgtgtgcaattggctaaagcgacactgattttgaaa 19276539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 66
Target Start/End: Original strand, 32275383 - 32275429
Alignment:
Q  20 cttaatatgtgtgcaattggctaaaacgacactcattttgaaacgga 66  Q
    |||||||||||||||||||| ||||||||| |||||||| |||||||    
T  32275383 cttaatatgtgtgcaattggttaaaacgacgctcattttaaaacgga 32275429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 66
Target Start/End: Original strand, 35778003 - 35778053
Alignment:
Q  16 attccttaatatgtgtgcaattggctaaaacgacactcattttgaaacgga 66  Q
    |||||||||||||||||||||| |||||| ||| ||||||||| |||||||    
T  35778003 attccttaatatgtgtgcaattagctaaagcgatactcattttaaaacgga 35778053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 66
Target Start/End: Original strand, 36836256 - 36836306
Alignment:
Q  16 attccttaatatgtgtgcaattggctaaaacgacactcattttgaaacgga 66  Q
    ||||||||||  |||| |||||||||||||||||||| |||||||||||||    
T  36836256 attccttaatccgtgtacaattggctaaaacgacactgattttgaaacgga 36836306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 9 - 58
Target Start/End: Complemental strand, 42879908 - 42879859
Alignment:
Q  9 ttattctattccttaatatgtgtgcaattggctaaaacgacactcatttt 58  Q
    |||||| |||||||| | |||||||||||||||||| |||||||||||||    
T  42879908 ttattccattccttactctgtgtgcaattggctaaagcgacactcatttt 42879859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 56
Target Start/End: Original strand, 24680312 - 24680352
Alignment:
Q  16 attccttaatatgtgtgcaattggctaaaacgacactcatt 56  Q
    |||||||||||| ||||||||| ||||||||||||||||||    
T  24680312 attccttaatatatgtgcaattagctaaaacgacactcatt 24680352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 68
Target Start/End: Original strand, 32345998 - 32346030
Alignment:
Q  36 ttggctaaaacgacactcattttgaaacggatg 68  Q
    |||||||||||||||||||||||||||||||||    
T  32345998 ttggctaaaacgacactcattttgaaacggatg 32346030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 68
Target Start/End: Original strand, 40339646 - 40339694
Alignment:
Q  20 cttaatatgtgtgcaattggctaaaacgacactcattttgaaacggatg 68  Q
    |||||| |||||||||||||||||||||||||  ||||| |||||||||    
T  40339646 cttaatctgtgtgcaattggctaaaacgacacatattttaaaacggatg 40339694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 18 - 66
Target Start/End: Complemental strand, 6389626 - 6389576
Alignment:
Q  18 tccttaatatgtgtgcaattggctaaaacgac--actcattttgaaacgga 66  Q
    |||||||||| |||||||||||||||||||||  ||||||||| |||||||    
T  6389626 tccttaatatatgtgcaattggctaaaacgacgtactcatttttaaacgga 6389576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 16 - 63
Target Start/End: Original strand, 17869421 - 17869468
Alignment:
Q  16 attccttaatatgtgtgcaattggctaaaacgacactcattttgaaac 63  Q
    |||||||||| |||||||||||| ||||||| ||| ||||||||||||    
T  17869421 attccttaatctgtgtgcaattgactaaaacaacattcattttgaaac 17869468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 9 - 68
Target Start/End: Complemental strand, 23155436 - 23155377
Alignment:
Q  9 ttattctattccttaatatgtgtgcaattggctaaaacgacactcattttgaaacggatg 68  Q
    |||||| |||| ||||| ||| |||||||||||||| ||| ||||||||| |||||||||    
T  23155436 ttattcaattctttaatctgtatgcaattggctaaagcgatactcattttaaaacggatg 23155377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 66
Target Start/End: Complemental strand, 16564770 - 16564720
Alignment:
Q  16 attccttaatatgtgtgcaattggctaaaacgacactcattttgaaacgga 66  Q
    |||||||||| ||| ||||||||| |||| ||||||||||||| |||||||    
T  16564770 attccttaatctgtatgcaattggttaaagcgacactcattttaaaacgga 16564720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 66
Target Start/End: Original strand, 16600892 - 16600942
Alignment:
Q  16 attccttaatatgtgtgcaattggctaaaacgacactcattttgaaacgga 66  Q
    |||||||||| ||| ||||||||| |||| ||||||||||||| |||||||    
T  16600892 attccttaatctgtatgcaattggttaaagcgacactcattttaaaacgga 16600942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 66
Target Start/End: Original strand, 36915553 - 36915603
Alignment:
Q  16 attccttaatatgtgtgcaattggctaaaacgacactcattttgaaacgga 66  Q
    |||||||||| | |||| || |||||||||||||||||||||| |||||||    
T  36915553 attccttaatctatgtgaaaatggctaaaacgacactcattttaaaacgga 36915603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 66
Target Start/End: Complemental strand, 42043942 - 42043904
Alignment:
Q  28 gtgtgcaattggctaaaacgacactcattttgaaacgga 66  Q
    |||||||||||||||||| ||| ||||||||||||||||    
T  42043942 gtgtgcaattggctaaaatgacgctcattttgaaacgga 42043904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 66
Target Start/End: Complemental strand, 42259506 - 42259468
Alignment:
Q  28 gtgtgcaattggctaaaacgacactcattttgaaacgga 66  Q
    ||||||||||||||| | |||||||||||||||||||||    
T  42259506 gtgtgcaattggctagagcgacactcattttgaaacgga 42259468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 69
Target Start/End: Complemental strand, 48838650 - 48838596
Alignment:
Q  15 tattccttaatatgtgtgcaattggctaaaacgacactcattttgaaacggatga 69  Q
    ||||||||||| ||||||||||||| |||||| ||||| ||||| ||||| ||||    
T  48838650 tattccttaatttgtgtgcaattggttaaaacaacacttattttaaaacgaatga 48838596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 68
Target Start/End: Complemental strand, 715818 - 715789
Alignment:
Q  39 gctaaaacgacactcattttgaaacggatg 68  Q
    ||||||||||||||||||||||||||||||    
T  715818 gctaaaacgacactcattttgaaacggatg 715789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 69
Target Start/End: Original strand, 18270775 - 18270804
Alignment:
Q  40 ctaaaacgacactcattttgaaacggatga 69  Q
    ||||||||||||||||||||||||||||||    
T  18270775 ctaaaacgacactcattttgaaacggatga 18270804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #41
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 68
Target Start/End: Complemental strand, 37502308 - 37502279
Alignment:
Q  39 gctaaaacgacactcattttgaaacggatg 68  Q
    ||||||||||||||||||||||||||||||    
T  37502308 gctaaaacgacactcattttgaaacggatg 37502279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #42
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 66
Target Start/End: Complemental strand, 39117464 - 39117407
Alignment:
Q  9 ttattctattccttaatatgtgtgcaattggctaaaacgacactcattttgaaacgga 66  Q
    |||||| |||| ||||| ||||||||| ||| |||| ||||||||||||| |||||||    
T  39117464 ttattccattctttaatctgtgtgcaagtggataaagcgacactcattttaaaacgga 39117407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #43
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 65
Target Start/End: Original strand, 45499987 - 45500016
Alignment:
Q  36 ttggctaaaacgacactcattttgaaacgg 65  Q
    ||||||||||||||||||||||||||||||    
T  45499987 ttggctaaaacgacactcattttgaaacgg 45500016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #44
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 38 - 66
Target Start/End: Complemental strand, 1741981 - 1741953
Alignment:
Q  38 ggctaaaacgacactcattttgaaacgga 66  Q
    |||||||||||||||||||||||||||||    
T  1741981 ggctaaaacgacactcattttgaaacgga 1741953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #45
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 68
Target Start/End: Complemental strand, 8334257 - 8334209
Alignment:
Q  20 cttaatatgtgtgcaattggctaaaacgacactcattttgaaacggatg 68  Q
    |||||| |||||||||||||| |||||||||| || ||| |||||||||    
T  8334257 cttaatctgtgtgcaattggcgaaaacgacacacaatttaaaacggatg 8334209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #46
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 64
Target Start/End: Original strand, 18733622 - 18733666
Alignment:
Q  20 cttaatatgtgtgcaattggctaaaacgacactcattttgaaacg 64  Q
    |||||| ||||| |||||| ||||||||||||| |||||||||||    
T  18733622 cttaatttgtgtacaattgactaaaacgacacttattttgaaacg 18733666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 2e-19; HSPs: 47)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 9 - 69
Target Start/End: Complemental strand, 14620470 - 14620409
Alignment:
Q  9 ttattctattccttaatatgtgtgcaattggctaaaacgacactcat-tttgaaacggatga 69  Q
    |||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||    
T  14620470 ttattctattccttaatatgtgtgcaattggctaaagcgacactcatatttgaaacggatga 14620409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 9 - 66
Target Start/End: Complemental strand, 42104039 - 42103982
Alignment:
Q  9 ttattctattccttaatatgtgtgcaattggctaaaacgacactcattttgaaacgga 66  Q
    |||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  42104039 ttattccattccttaatatgtgtgcaattggctaaagcgacactcattttgaaacgga 42103982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 16 - 69
Target Start/End: Complemental strand, 38982123 - 38982070
Alignment:
Q  16 attccttaatatgtgtgcaattggctaaaacgacactcattttgaaacggatga 69  Q
    |||||||||| |||||||||||||||||||||||| ||||||||||||||||||    
T  38982123 attccttaatttgtgtgcaattggctaaaacgacattcattttgaaacggatga 38982070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 6 - 66
Target Start/End: Original strand, 7145022 - 7145082
Alignment:
Q  6 acattattctattccttaatatgtgtgcaattggctaaaacgacactcattttgaaacgga 66  Q
    ||||||||| |||||||||| |||||||||||||||||| | |||||||||||||||||||    
T  7145022 acattattcaattccttaatttgtgtgcaattggctaaagcaacactcattttgaaacgga 7145082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 42661909 - 42661861
Alignment:
Q  16 attccttaatatgtgtgcaattggctaaaacgacactcattttgaaacg 64  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||    
T  42661909 attccttaatatgtgtgcaattggctaaagcgacactcattttgaaacg 42661861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 16 - 63
Target Start/End: Complemental strand, 4751499 - 4751452
Alignment:
Q  16 attccttaatatgtgtgcaattggctaaaacgacactcattttgaaac 63  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  4751499 attccttaatatgtgtgcaattggctaaaacgacactcattttaaaac 4751452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 9 - 64
Target Start/End: Original strand, 39730123 - 39730178
Alignment:
Q  9 ttattctattccttaatatgtgtgcaattggctaaaacgacactcattttgaaacg 64  Q
    |||||| ||||||||||||||||||||||| ||||||||||||||||||| |||||    
T  39730123 ttattccattccttaatatgtgtgcaattgcctaaaacgacactcattttaaaacg 39730178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 66
Target Start/End: Original strand, 26660938 - 26660988
Alignment:
Q  16 attccttaatatgtgtgcaattggctaaaacgacactcattttgaaacgga 66  Q
    ||||||||||||||||||||||||||||| ||||||||||||| |||||||    
T  26660938 attccttaatatgtgtgcaattggctaaagcgacactcattttaaaacgga 26660988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 66
Target Start/End: Original strand, 26932531 - 26932581
Alignment:
Q  16 attccttaatatgtgtgcaattggctaaaacgacactcattttgaaacgga 66  Q
    ||||||||||||||||||||||||||||| ||||||||||||| |||||||    
T  26932531 attccttaatatgtgtgcaattggctaaagcgacactcattttaaaacgga 26932581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 11 - 66
Target Start/End: Original strand, 4371529 - 4371584
Alignment:
Q  11 attctattccttaatatgtgtgcaattggctaaaacgacactcattttgaaacgga 66  Q
    |||| |||||||||| ||||||||||| | ||||||||||||||||||||||||||    
T  4371529 attccattccttaatttgtgtgcaattagttaaaacgacactcattttgaaacgga 4371584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 16 - 63
Target Start/End: Complemental strand, 4742235 - 4742188
Alignment:
Q  16 attccttaatatgtgtgcaattggctaaaacgacactcattttgaaac 63  Q
    ||||||||||||||||||||||| ||||||||||||||||||| ||||    
T  4742235 attccttaatatgtgtgcaattgactaaaacgacactcattttaaaac 4742188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 15 - 66
Target Start/End: Complemental strand, 24436510 - 24436459
Alignment:
Q  15 tattccttaatatgtgtgcaattggctaaaacgacactcattttgaaacgga 66  Q
    ||||||||||| | |||||||||||||||||||||||||||||| |||||||    
T  24436510 tattccttaatctatgtgcaattggctaaaacgacactcattttaaaacgga 24436459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 16 - 66
Target Start/End: Complemental strand, 166618 - 166568
Alignment:
Q  16 attccttaatatgtgtgcaattggctaaaacgacactcattttgaaacgga 66  Q
    |||||||||| |||||||||||||||||  |||||||||||||||||||||    
T  166618 attccttaatctgtgtgcaattggctaacgcgacactcattttgaaacgga 166568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 9 - 58
Target Start/End: Complemental strand, 793580 - 793531
Alignment:
Q  9 ttattctattccttaatatgtgtgcaattggctaaaacgacactcatttt 58  Q
    |||||| |||||||||| ||||||||||||||||||||| ||||||||||    
T  793580 ttattccattccttaatttgtgtgcaattggctaaaacggcactcatttt 793531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 9 - 58
Target Start/End: Complemental strand, 8336383 - 8336334
Alignment:
Q  9 ttattctattccttaatatgtgtgcaattggctaaaacgacactcatttt 58  Q
    |||||| |||||||||||| |||| |||||||||||||||||||||||||    
T  8336383 ttattccattccttaatatttgtgtaattggctaaaacgacactcatttt 8336334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 9 - 66
Target Start/End: Complemental strand, 29807290 - 29807233
Alignment:
Q  9 ttattctattccttaatatgtgtgcaattggctaaaacgacactcattttgaaacgga 66  Q
    |||||| ||||||||||||| |||| |||||||||| ||||||| |||||||||||||    
T  29807290 ttattccattccttaatatgcgtgctattggctaaagcgacacttattttgaaacgga 29807233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 16 - 68
Target Start/End: Complemental strand, 2729755 - 2729703
Alignment:
Q  16 attccttaatatgtgtgcaattggctaaaacgacactcattttgaaacggatg 68  Q
    |||||||||| ||| |||||||||||||| ||||| |||||||||||||||||    
T  2729755 attccttaatctgtatgcaattggctaaagcgacaatcattttgaaacggatg 2729703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 11 - 66
Target Start/End: Complemental strand, 12167584 - 12167529
Alignment:
Q  11 attctattccttaatatgtgtgcaattggctaaaacgacactcattttgaaacgga 66  Q
    |||| ||| |||||| ||||||||||| |||||| |||||||||||||||||||||    
T  12167584 attcaatttcttaatttgtgtgcaattagctaaagcgacactcattttgaaacgga 12167529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 16 - 63
Target Start/End: Original strand, 36660609 - 36660656
Alignment:
Q  16 attccttaatatgtgtgcaattggctaaaacgacactcattttgaaac 63  Q
    |||||||||| ||||||||||| |||||| ||||||||||||||||||    
T  36660609 attccttaatctgtgtgcaattagctaaagcgacactcattttgaaac 36660656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 16 - 67
Target Start/End: Complemental strand, 42329513 - 42329462
Alignment:
Q  16 attccttaatatgtgtgcaattggctaaaacgacactcattttgaaacggat 67  Q
    |||||||||| ||||||||||||| |||| ||| ||||||||||||||||||    
T  42329513 attccttaatttgtgtgcaattggttaaagcgatactcattttgaaacggat 42329462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 62
Target Start/End: Complemental strand, 3305978 - 3305932
Alignment:
Q  16 attccttaatatgtgtgcaattggctaaaacgacactcattttgaaa 62  Q
    ||||||||||||  |||||||||| ||||||||||||||||||||||    
T  3305978 attccttaatatacgtgcaattggttaaaacgacactcattttgaaa 3305932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 66
Target Start/End: Original strand, 6519161 - 6519211
Alignment:
Q  16 attccttaatatgtgtgcaattggctaaaacgacactcattttgaaacgga 66  Q
    ||||||||||||||||| ||||  ||||||||||||||||||| |||||||    
T  6519161 attccttaatatgtgtgtaattaactaaaacgacactcattttaaaacgga 6519211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 66
Target Start/End: Original strand, 36783543 - 36783589
Alignment:
Q  20 cttaatatgtgtgcaattggctaaaacgacactcattttgaaacgga 66  Q
    |||||| |||||||||||||||||| ||| |||||||||||||||||    
T  36783543 cttaatctgtgtgcaattggctaaagcgatactcattttgaaacgga 36783589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 62
Target Start/End: Original strand, 39566367 - 39566413
Alignment:
Q  16 attccttaatatgtgtgcaattggctaaaacgacactcattttgaaa 62  Q
    ||||||||||||||||| |||||| |||| |||||||||||||||||    
T  39566367 attccttaatatgtgtgtaattggttaaagcgacactcattttgaaa 39566413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 9 - 66
Target Start/End: Complemental strand, 8961011 - 8960954
Alignment:
Q  9 ttattctattccttaatatgtgtgcaattggctaaaacgacactcattttgaaacgga 66  Q
    ||||| ||||||||||||| |||| |||||  |||||||||||||||||| |||||||    
T  8961011 ttattatattccttaatatatgtgtaattgagtaaaacgacactcattttaaaacgga 8960954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 9 - 66
Target Start/End: Complemental strand, 21375626 - 21375569
Alignment:
Q  9 ttattctattccttaatatgtgtgcaattggctaaaacgacactcattttgaaacgga 66  Q
    |||||| |||| ||||| | ||||||||||||||||  ||||||||||||||||||||    
T  21375626 ttattccattctttaatctttgtgcaattggctaaagtgacactcattttgaaacgga 21375569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 21 - 66
Target Start/End: Complemental strand, 34972614 - 34972569
Alignment:
Q  21 ttaatatgtgtgcaattggctaaaacgacactcattttgaaacgga 66  Q
    ||||| |||||||||||||||||| ||||||||||||| |||||||    
T  34972614 ttaatctgtgtgcaattggctaaagcgacactcattttaaaacgga 34972569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 68
Target Start/End: Original strand, 14620656 - 14620688
Alignment:
Q  36 ttggctaaaacgacactcattttgaaacggatg 68  Q
    |||||||||||||||||||||||||||||||||    
T  14620656 ttggctaaaacgacactcattttgaaacggatg 14620688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 69
Target Start/End: Complemental strand, 27652295 - 27652235
Alignment:
Q  9 ttattctattccttaatatgtgtgcaattggctaaaacgacactcattttgaaacggatga 69  Q
    |||||| ||| |||||| |||||| ||||| ||||| ||||||||||||| ||||||||||    
T  27652295 ttattccatttcttaatctgtgtgtaattgcctaaagcgacactcattttaaaacggatga 27652235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 56
Target Start/End: Complemental strand, 42978042 - 42978002
Alignment:
Q  16 attccttaatatgtgtgcaattggctaaaacgacactcatt 56  Q
    |||||||||| |||||| |||||||||||||||||||||||    
T  42978042 attccttaatctgtgtgaaattggctaaaacgacactcatt 42978002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 58
Target Start/End: Complemental strand, 4833605 - 4833563
Alignment:
Q  16 attccttaatatgtgtgcaattggctaaaacgacactcatttt 58  Q
    ||||||||| || |||||||||||||||| |||||||||||||    
T  4833605 attccttaacatatgtgcaattggctaaagcgacactcatttt 4833563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 62
Target Start/End: Original strand, 14006076 - 14006122
Alignment:
Q  16 attccttaatatgtgtgcaattggctaaaacgacactcattttgaaa 62  Q
    |||||||||||| | |||||||||||||| | |||||||||||||||    
T  14006076 attccttaatatatatgcaattggctaaagcaacactcattttgaaa 14006122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 62
Target Start/End: Original strand, 15567097 - 15567143
Alignment:
Q  16 attccttaatatgtgtgcaattggctaaaacgacactcattttgaaa 62  Q
    |||||||||| |||||| || |||||||| |||||||||||||||||    
T  15567097 attccttaatctgtgtgaaaatggctaaagcgacactcattttgaaa 15567143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 66
Target Start/End: Original strand, 21375812 - 21375842
Alignment:
Q  36 ttggctaaaacgacactcattttgaaacgga 66  Q
    |||||||||||||||||||||||||||||||    
T  21375812 ttggctaaaacgacactcattttgaaacgga 21375842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 58
Target Start/End: Original strand, 27600578 - 27600620
Alignment:
Q  16 attccttaatatgtgtgcaattggctaaaacgacactcatttt 58  Q
    |||||||||||||||| ||||||||||||  ||||||||||||    
T  27600578 attccttaatatgtgttcaattggctaaagtgacactcatttt 27600620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 66
Target Start/End: Original strand, 33693914 - 33693964
Alignment:
Q  16 attccttaatatgtgtgcaattggctaaaacgacactcattttgaaacgga 66  Q
    |||| ||||||| |||| ||||||||||||||||||| ||||| |||||||    
T  33693914 attctttaatatatgtgtaattggctaaaacgacacttattttaaaacgga 33693964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 58
Target Start/End: Complemental strand, 34445997 - 34445955
Alignment:
Q  16 attccttaatatgtgtgcaattggctaaaacgacactcatttt 58  Q
    |||||||||||| ||||||||||| |||| |||||||||||||    
T  34445997 attccttaatatatgtgcaattggttaaagcgacactcatttt 34445955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #38
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 62
Target Start/End: Original strand, 34919919 - 34919965
Alignment:
Q  16 attccttaatatgtgtgcaattggctaaaacgacactcattttgaaa 62  Q
    |||||||||| |||||| ||||||||||| ||| |||||||||||||    
T  34919919 attccttaatctgtgtgtaattggctaaagcgatactcattttgaaa 34919965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #39
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 66
Target Start/End: Original strand, 42104226 - 42104256
Alignment:
Q  36 ttggctaaaacgacactcattttgaaacgga 66  Q
    |||||||||||||||||||||||||||||||    
T  42104226 ttggctaaaacgacactcattttgaaacgga 42104256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #40
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 66
Target Start/End: Complemental strand, 43257829 - 43257780
Alignment:
Q  16 attccttaatatgtgtgcaattggctaaaacgacactcattttgaaacgga 66  Q
    |||| ||||| |||||||||||||||||||| ||||||||||| |||||||    
T  43257829 attctttaatctgtgtgcaattggctaaaac-acactcattttaaaacgga 43257780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #41
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 66
Target Start/End: Complemental strand, 21375545 - 21375488
Alignment:
Q  9 ttattctattccttaatatgtgtgcaattggctaaaacgacactcattttgaaacgga 66  Q
    |||||| |||| ||||| ||||||||||||||||||  | |||| |||||||||||||    
T  21375545 ttattccattcattaatctgtgtgcaattggctaaagtggcacttattttgaaacgga 21375488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #42
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 69
Target Start/End: Original strand, 28798227 - 28798280
Alignment:
Q  16 attccttaatatgtgtgcaattggctaaaacgacactcattttgaaacggatga 69  Q
    ||||||||||||||||| |||||| |||| ||||| | ||||||||| ||||||    
T  28798227 attccttaatatgtgtgtaattggttaaagcgacaattattttgaaagggatga 28798280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #43
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 66
Target Start/End: Complemental strand, 33822465 - 33822420
Alignment:
Q  21 ttaatatgtgtgcaattggctaaaacgacactcattttgaaacgga 66  Q
    ||||| ||||||||||||| |||||||| | |||||||||||||||    
T  33822465 ttaatctgtgtgcaattggttaaaacgatattcattttgaaacgga 33822420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #44
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 66
Target Start/End: Complemental strand, 36296088 - 36296051
Alignment:
Q  29 tgtgcaattggctaaaacgacactcattttgaaacgga 66  Q
    |||||||||||||||| ||||||||||||| |||||||    
T  36296088 tgtgcaattggctaaagcgacactcattttaaaacgga 36296051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #45
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 66
Target Start/End: Complemental strand, 39335179 - 39335122
Alignment:
Q  9 ttattctattccttaatatgtgtgcaattggctaaaacgacactcattttgaaacgga 66  Q
    |||||| |||||||||| | | |||||||| ||||||||||| ||||||| |||||||    
T  39335179 ttattcaattccttaatttatatgcaattgactaaaacgacattcattttaaaacgga 39335122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #46
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 65
Target Start/End: Original strand, 40330873 - 40330902
Alignment:
Q  36 ttggctaaaacgacactcattttgaaacgg 65  Q
    ||||||||||||||||||||||||||||||    
T  40330873 ttggctaaaacgacactcattttgaaacgg 40330902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #47
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 68
Target Start/End: Original strand, 11977775 - 11977823
Alignment:
Q  20 cttaatatgtgtgcaattggctaaaacgacactcattttgaaacggatg 68  Q
    ||||||||||||| ||   ||| ||||||||||||||||||||||||||    
T  11977775 cttaatatgtgtgtaaaaagcttaaacgacactcattttgaaacggatg 11977823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 62)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 9 - 66
Target Start/End: Original strand, 44676398 - 44676455
Alignment:
Q  9 ttattctattccttaatatgtgtgcaattggctaaaacgacactcattttgaaacgga 66  Q
    |||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||    
T  44676398 ttattctattccttaatatgtgtgtaattggctaaaacaacactcattttgaaacgga 44676455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 16 - 66
Target Start/End: Complemental strand, 44648379 - 44648329
Alignment:
Q  16 attccttaatatgtgtgcaattggctaaaacgacactcattttgaaacgga 66  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  44648379 attccttaatctgtgtgcaattggctaaaacgacactcattttgaaacgga 44648329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 17 - 66
Target Start/End: Complemental strand, 23525281 - 23525232
Alignment:
Q  17 ttccttaatatgtgtgcaattggctaaaacgacactcattttgaaacgga 66  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  23525281 ttccttaatatgtgtgcaattggctaaaacgacactcatattgaaacgga 23525232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 16 - 68
Target Start/End: Original strand, 25061877 - 25061929
Alignment:
Q  16 attccttaatatgtgtgcaattggctaaaacgacactcattttgaaacggatg 68  Q
    ||||||||||||||||||||| ||||||||||||||||||||| |||||||||    
T  25061877 attccttaatatgtgtgcaatcggctaaaacgacactcatttttaaacggatg 25061929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 16 - 68
Target Start/End: Original strand, 42791480 - 42791532
Alignment:
Q  16 attccttaatatgtgtgcaattggctaaaacgacactcattttgaaacggatg 68  Q
    ||||||||||||| |||||||||||||||| ||||||||||||||||||||||    
T  42791480 attccttaatatgcgtgcaattggctaaaatgacactcattttgaaacggatg 42791532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 9 - 68
Target Start/End: Complemental strand, 36729745 - 36729686
Alignment:
Q  9 ttattctattccttaatatgtgtgcaattggctaaaacgacactcattttgaaacggatg 68  Q
    |||||| ||| |||||||||||||||||||||||||||||| ||||||||||||| ||||    
T  36729745 ttattccattacttaatatgtgtgcaattggctaaaacgacgctcattttgaaacagatg 36729686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 66
Target Start/End: Original strand, 2458192 - 2458242
Alignment:
Q  16 attccttaatatgtgtgcaattggctaaaacgacactcattttgaaacgga 66  Q
    |||||||||||||||||||||||||||||  ||||||||||||||||||||    
T  2458192 attccttaatatgtgtgcaattggctaaagtgacactcattttgaaacgga 2458242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 66
Target Start/End: Complemental strand, 47895310 - 47895260
Alignment:
Q  16 attccttaatatgtgtgcaattggctaaaacgacactcattttgaaacgga 66  Q
    ||||||||||||||||||||||||||||| ||||||||||||| |||||||    
T  47895310 attccttaatatgtgtgcaattggctaaagcgacactcattttaaaacgga 47895260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 16 - 68
Target Start/End: Original strand, 16240751 - 16240803
Alignment:
Q  16 attccttaatatgtgtgcaattggctaaaacgacactcattttgaaacggatg 68  Q
    ||||| |||| |||||||||| |||||||||||||||||||||||||||||||    
T  16240751 attccctaatttgtgtgcaataggctaaaacgacactcattttgaaacggatg 16240803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 18 - 66
Target Start/End: Complemental strand, 41287460 - 41287412
Alignment:
Q  18 tccttaatatgtgtgcaattggctaaaacgacactcattttgaaacgga 66  Q
    ||||||||||||||| ||||||||||| |||||||||||||||||||||    
T  41287460 tccttaatatgtgtgtaattggctaaagcgacactcattttgaaacgga 41287412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 16 - 68
Target Start/End: Original strand, 41850565 - 41850617
Alignment:
Q  16 attccttaatatgtgtgcaattggctaaaacgacactcattttgaaacggatg 68  Q
    |||||||||||||||||||||| |||||| || ||||||||||||||||||||    
T  41850565 attccttaatatgtgtgcaattagctaaagcgccactcattttgaaacggatg 41850617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 16 - 68
Target Start/End: Complemental strand, 54933172 - 54933120
Alignment:
Q  16 attccttaatatgtgtgcaattggctaaaacgacactcattttgaaacggatg 68  Q
    |||||||||||| |||||||||||||||| ||||||||||||| |||||||||    
T  54933172 attccttaatatatgtgcaattggctaaagcgacactcattttaaaacggatg 54933120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 16 - 63
Target Start/End: Complemental strand, 3152773 - 3152726
Alignment:
Q  16 attccttaatatgtgtgcaattggctaaaacgacactcattttgaaac 63  Q
    |||||||||||||||||||||||| |||||||||||||||||| ||||    
T  3152773 attccttaatatgtgtgcaattggttaaaacgacactcattttaaaac 3152726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 16 - 66
Target Start/End: Complemental strand, 31290943 - 31290893
Alignment:
Q  16 attccttaatatgtgtgcaattggctaaaacgacactcattttgaaacgga 66  Q
    |||||||||| |||||| ||||||||||||||||||||||||| |||||||    
T  31290943 attccttaatctgtgtgtaattggctaaaacgacactcattttaaaacgga 31290893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 16 - 58
Target Start/End: Complemental strand, 45213688 - 45213646
Alignment:
Q  16 attccttaatatgtgtgcaattggctaaaacgacactcatttt 58  Q
    ||||||||||||||||||||||||||||| |||||||||||||    
T  45213688 attccttaatatgtgtgcaattggctaaagcgacactcatttt 45213646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 20 - 66
Target Start/End: Original strand, 51398198 - 51398244
Alignment:
Q  20 cttaatatgtgtgcaattggctaaaacgacactcattttgaaacgga 66  Q
    |||||| |||||||||||||||||| |||||||||||||||||||||    
T  51398198 cttaatctgtgtgcaattggctaaagcgacactcattttgaaacgga 51398244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 11 - 68
Target Start/End: Complemental strand, 2567986 - 2567929
Alignment:
Q  11 attctattccttaatatgtgtgcaattggctaaaacgacactcattttgaaacggatg 68  Q
    |||| |||||||||| | |||||||||||||||||||||| ||||||| |||||||||    
T  2567986 attcaattccttaatctatgtgcaattggctaaaacgacattcattttaaaacggatg 2567929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 9 - 66
Target Start/End: Complemental strand, 2988584 - 2988527
Alignment:
Q  9 ttattctattccttaatatgtgtgcaattggctaaaacgacactcattttgaaacgga 66  Q
    |||||| ||||||||||   |||||||||||||||| |||||||||||||||||||||    
T  2988584 ttattccattccttaatccatgtgcaattggctaaagcgacactcattttgaaacgga 2988527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 11 - 68
Target Start/End: Original strand, 44854492 - 44854549
Alignment:
Q  11 attctattccttaatatgtgtgcaattggctaaaacgacactcattttgaaacggatg 68  Q
    |||| |||| ||||| | |||||||||||||||||||||| |||||||||||||||||    
T  44854492 attcaattcattaatctatgtgcaattggctaaaacgacaatcattttgaaacggatg 44854549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 9 - 66
Target Start/End: Original strand, 53560843 - 53560900
Alignment:
Q  9 ttattctattccttaatatgtgtgcaattggctaaaacgacactcattttgaaacgga 66  Q
    ||||| ||||||||||||||| || ||||||||||||||||||| ||||| |||||||    
T  53560843 ttattttattccttaatatgtatgtaattggctaaaacgacacttattttaaaacgga 53560900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 9 - 66
Target Start/End: Original strand, 54261594 - 54261651
Alignment:
Q  9 ttattctattccttaatatgtgtgcaattggctaaaacgacactcattttgaaacgga 66  Q
    |||||| ||| |||||| |||||| ||||||||||| |||||||||||||||||||||    
T  54261594 ttattcaatttcttaatctgtgtgtaattggctaaagcgacactcattttgaaacgga 54261651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 11 - 67
Target Start/End: Complemental strand, 46362984 - 46362928
Alignment:
Q  11 attctattccttaatatgtgtgcaattggctaaaacgacactcattttgaaacggat 67  Q
    |||| |||||||||||||||||||||  ||| |||||||||||||||||||| ||||    
T  46362984 attcaattccttaatatgtgtgcaatacgctgaaacgacactcattttgaaatggat 46362928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 16 - 64
Target Start/End: Original strand, 51381910 - 51381958
Alignment:
Q  16 attccttaatatgtgtgcaattggctaaaacgacactcattttgaaacg 64  Q
    |||||||||| |||||||||||| ||||| |||||||||||||||||||    
T  51381910 attccttaatctgtgtgcaattgactaaagcgacactcattttgaaacg 51381958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 16 - 63
Target Start/End: Complemental strand, 33193997 - 33193950
Alignment:
Q  16 attccttaatatgtgtgcaattggctaaaacgacactcattttgaaac 63  Q
    |||||||||| |||||||||||| ||||| ||||||||||||||||||    
T  33193997 attccttaatctgtgtgcaattgactaaagcgacactcattttgaaac 33193950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 29 - 68
Target Start/End: Complemental strand, 43736827 - 43736788
Alignment:
Q  29 tgtgcaattggctaaaacgacactcattttgaaacggatg 68  Q
    |||||||||||||||| |||||||||||||||||||||||    
T  43736827 tgtgcaattggctaaagcgacactcattttgaaacggatg 43736788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 11 - 66
Target Start/End: Original strand, 45095709 - 45095764
Alignment:
Q  11 attctattccttaatatgtgtgcaattggctaaaacgacactcattttgaaacgga 66  Q
    |||| ||||||||||||| |||||||| |||||| ||||| |||||||||||||||    
T  45095709 attccattccttaatatgcgtgcaattagctaaagcgacaatcattttgaaacgga 45095764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 21 - 68
Target Start/End: Original strand, 47138154 - 47138201
Alignment:
Q  21 ttaatatgtgtgcaattggctaaaacgacactcattttgaaacggatg 68  Q
    |||||||||||||||||| |||||  ||||||||||||||||||||||    
T  47138154 ttaatatgtgtgcaattgactaaagtgacactcattttgaaacggatg 47138201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 19 - 66
Target Start/End: Complemental strand, 52222816 - 52222769
Alignment:
Q  19 ccttaatatgtgtgcaattggctaaaacgacactcattttgaaacgga 66  Q
    |||||||  ||||||||||||||||||||||||| |||||||||||||    
T  52222816 ccttaatccgtgtgcaattggctaaaacgacactaattttgaaacgga 52222769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 66
Target Start/End: Original strand, 4392083 - 4392129
Alignment:
Q  20 cttaatatgtgtgcaattggctaaaacgacactcattttgaaacgga 66  Q
    |||||| ||| |||||||||| |||||||||||||||||||||||||    
T  4392083 cttaatttgtatgcaattggccaaaacgacactcattttgaaacgga 4392129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 66
Target Start/End: Original strand, 19373773 - 19373819
Alignment:
Q  20 cttaatatgtgtgcaattggctaaaacgacactcattttgaaacgga 66  Q
    |||||| |||||||||||||||||||||||| ||||||||| |||||    
T  19373773 cttaatctgtgtgcaattggctaaaacgacattcattttgagacgga 19373819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 58
Target Start/End: Original strand, 38277936 - 38277978
Alignment:
Q  16 attccttaatatgtgtgcaattggctaaaacgacactcatttt 58  Q
    |||||||||| || |||||||||||||||||||||||||||||    
T  38277936 attccttaatttgagtgcaattggctaaaacgacactcatttt 38277978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 66
Target Start/End: Complemental strand, 42857060 - 42857010
Alignment:
Q  16 attccttaatatgtgtgcaattggctaaaacgacactcattttgaaacgga 66  Q
    |||||||||| |||||| ||||| ||||||||||||||||||| |||||||    
T  42857060 attccttaatctgtgtgtaattgcctaaaacgacactcattttaaaacgga 42857010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 11 - 65
Target Start/End: Original strand, 43580658 - 43580712
Alignment:
Q  11 attctattccttaatatgtgtgcaattggctaaaacgacactcattttgaaacgg 65  Q
    ||||||||||||||| |||||||||||||||||| || | |||||||| ||||||    
T  43580658 attctattccttaatctgtgtgcaattggctaaagcgtcgctcattttaaaacgg 43580712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 9 - 66
Target Start/End: Complemental strand, 20512470 - 20512413
Alignment:
Q  9 ttattctattccttaatatgtgtgcaattggctaaaacgacactcattttgaaacgga 66  Q
    |||||| ||| |||||| |||||||||||| ||||| ||||||||||||| |||||||    
T  20512470 ttattcaatttcttaatctgtgtgcaattgactaaagcgacactcattttaaaacgga 20512413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 11 - 68
Target Start/End: Original strand, 27027914 - 27027970
Alignment:
Q  11 attctattccttaatatgtgtgcaattggctaaaacgacactcattttgaaacggatg 68  Q
    |||| ||| |||||||||||||||||||| |||||||||||| | |||||||||||||    
T  27027914 attccattacttaatatgtgtgcaattggttaaaacgacactta-tttgaaacggatg 27027970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 11 - 68
Target Start/End: Original strand, 27039505 - 27039561
Alignment:
Q  11 attctattccttaatatgtgtgcaattggctaaaacgacactcattttgaaacggatg 68  Q
    |||| ||| |||||||||||||||||||| ||||||||||| || |||||||||||||    
T  27039505 attccattacttaatatgtgtgcaattggttaaaacgacaccca-tttgaaacggatg 27039561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 9 - 66
Target Start/End: Complemental strand, 33024273 - 33024217
Alignment:
Q  9 ttattctattccttaatatgtgtgcaattggctaaaacgacactcattttgaaacgga 66  Q
    |||||| |||||||||| |||||||||||||||||||| | | |||||||||||||||    
T  33024273 ttattcaattccttaatttgtgtgcaattggctaaaac-atattcattttgaaacgga 33024217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 20 - 69
Target Start/End: Complemental strand, 35099340 - 35099291
Alignment:
Q  20 cttaatatgtgtgcaattggctaaaacgacactcattttgaaacggatga 69  Q
    |||||| ||||||||||| ||||||||||||| |||||| ||||||||||    
T  35099340 cttaatttgtgtgcaatttgctaaaacgacacccattttaaaacggatga 35099291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 21 - 66
Target Start/End: Original strand, 38363980 - 38364025
Alignment:
Q  21 ttaatatgtgtgcaattggctaaaacgacactcattttgaaacgga 66  Q
    ||||| ||| |||||||||||||||||||||||||||| |||||||    
T  38363980 ttaatctgtatgcaattggctaaaacgacactcattttaaaacgga 38364025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 9 - 66
Target Start/End: Complemental strand, 43687857 - 43687800
Alignment:
Q  9 ttattctattccttaatatgtgtgcaattggctaaaacgacactcattttgaaacgga 66  Q
    |||||| |||| |||||  ||||||||||| ||||||||||||| |||||||||||||    
T  43687857 ttattccattcattaatccgtgtgcaattgactaaaacgacacttattttgaaacgga 43687800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 9 - 58
Target Start/End: Complemental strand, 52201900 - 52201851
Alignment:
Q  9 ttattctattccttaatatgtgtgcaattggctaaaacgacactcatttt 58  Q
    |||||||||||||||||  ||||||||||| |||||||||||| ||||||    
T  52201900 ttattctattccttaatccgtgtgcaattgactaaaacgacacgcatttt 52201851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 52
Target Start/End: Original strand, 83479 - 83515
Alignment:
Q  16 attccttaatatgtgtgcaattggctaaaacgacact 52  Q
    |||||||||| ||||||||||||||||||||||||||    
T  83479 attccttaatttgtgtgcaattggctaaaacgacact 83515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 68
Target Start/End: Complemental strand, 38016367 - 38016335
Alignment:
Q  36 ttggctaaaacgacactcattttgaaacggatg 68  Q
    |||||||||||||||||||||||||||||||||    
T  38016367 ttggctaaaacgacactcattttgaaacggatg 38016335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 58
Target Start/End: Original strand, 42940152 - 42940204
Alignment:
Q  6 acattattctattccttaatatgtgtgcaattggctaaaacgacactcatttt 58  Q
    ||||||||| |||||||| | |||||| ||||||||||| |||||||||||||    
T  42940152 acattattccattccttagtctgtgtgtaattggctaaagcgacactcatttt 42940204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 29 - 69
Target Start/End: Original strand, 45566993 - 45567033
Alignment:
Q  29 tgtgcaattggctaaaacgacactcattttgaaacggatga 69  Q
    ||||||||||||||||| |||||||||||| ||||||||||    
T  45566993 tgtgcaattggctaaaatgacactcattttaaaacggatga 45567033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #46
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 20 - 63
Target Start/End: Complemental strand, 647557 - 647514
Alignment:
Q  20 cttaatatgtgtgcaattggctaaaacgacactcattttgaaac 63  Q
    |||||| ||||||||||||| |||||||||||| ||||||||||    
T  647557 cttaatctgtgtgcaattgggtaaaacgacacttattttgaaac 647514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #47
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 16 - 67
Target Start/End: Original strand, 44645525 - 44645576
Alignment:
Q  16 attccttaatatgtgtgcaattggctaaaacgacactcattttgaaacggat 67  Q
    |||| |||||||||||| |||| |||||||||||| | ||||||||||||||    
T  44645525 attctttaatatgtgtgtaattagctaaaacgacatttattttgaaacggat 44645576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #48
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 66
Target Start/End: Complemental strand, 4476331 - 4476281
Alignment:
Q  16 attccttaatatgtgtgcaattggctaaaacgacactcattttgaaacgga 66  Q
    |||| ||||||| |||| ||||||||||||||||||| ||||| |||||||    
T  4476331 attctttaatatatgtgtaattggctaaaacgacacttattttaaaacgga 4476281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #49
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 66
Target Start/End: Original strand, 20512657 - 20512687
Alignment:
Q  36 ttggctaaaacgacactcattttgaaacgga 66  Q
    |||||||||||||||||||||||||||||||    
T  20512657 ttggctaaaacgacactcattttgaaacgga 20512687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #50
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 63
Target Start/End: Complemental strand, 25722435 - 25722381
Alignment:
Q  9 ttattctattccttaatatgtgtgcaattggctaaaacgacactcattttgaaac 63  Q
    |||||| ||| |||||| |||||||||||||||||| ||| ||| ||||||||||    
T  25722435 ttattccatttcttaatctgtgtgcaattggctaaatcgatacttattttgaaac 25722381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #51
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 58
Target Start/End: Complemental strand, 27483162 - 27483120
Alignment:
Q  16 attccttaatatgtgtgcaattggctaaaacgacactcatttt 58  Q
    |||||||||| |||||||||| ||||||| |||||||||||||    
T  27483162 attccttaatttgtgtgcaatgggctaaagcgacactcatttt 27483120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #52
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 66
Target Start/End: Complemental strand, 35557719 - 35557669
Alignment:
Q  16 attccttaatatgtgtgcaattggctaaaacgacactcattttgaaacgga 66  Q
    |||| ||||| ||||||||| |||||||||||||| | |||||||||||||    
T  35557719 attcattaatctgtgtgcaaatggctaaaacgacatttattttgaaacgga 35557669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #53
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 58
Target Start/End: Complemental strand, 38165630 - 38165588
Alignment:
Q  16 attccttaatatgtgtgcaattggctaaaacgacactcatttt 58  Q
    |||||||||| ||| |||||||| |||||||||||||||||||    
T  38165630 attccttaatctgtatgcaattgactaaaacgacactcatttt 38165588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #54
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 66
Target Start/End: Original strand, 42740406 - 42740456
Alignment:
Q  16 attccttaatatgtgtgcaattggctaaaacgacactcattttgaaacgga 66  Q
    |||| ||||||| |||| ||||||||||||||||||| ||||| |||||||    
T  42740406 attctttaatatatgtgtaattggctaaaacgacacttattttaaaacgga 42740456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #55
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 66
Target Start/End: Complemental strand, 54261407 - 54261377
Alignment:
Q  36 ttggctaaaacgacactcattttgaaacgga 66  Q
    |||||||||||||||||||||||||||||||    
T  54261407 ttggctaaaacgacactcattttgaaacgga 54261377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #56
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 68
Target Start/End: Complemental strand, 44645328 - 44645299
Alignment:
Q  39 gctaaaacgacactcattttgaaacggatg 68  Q
    ||||||||||||||||||||||||||||||    
T  44645328 gctaaaacgacactcattttgaaacggatg 44645299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #57
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 58
Target Start/End: Complemental strand, 45391919 - 45391882
Alignment:
Q  21 ttaatatgtgtgcaattggctaaaacgacactcatttt 58  Q
    |||||||||| ||||||||||||| |||||||||||||    
T  45391919 ttaatatgtgcgcaattggctaaaccgacactcatttt 45391882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #58
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 68
Target Start/End: Complemental strand, 15514704 - 15514652
Alignment:
Q  16 attccttaatatgtgtgcaattggctaaaacgacactcattttgaaacggatg 68  Q
    |||||||| | | |||||||||| ||||||||||| ||||||| |||||||||    
T  15514704 attccttattttatgtgcaattgactaaaacgacattcattttaaaacggatg 15514652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #59
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 34 - 66
Target Start/End: Original strand, 30186377 - 30186409
Alignment:
Q  34 aattggctaaaacgacactcattttgaaacgga 66  Q
    ||||||||||||||||||||||||| |||||||    
T  30186377 aattggctaaaacgacactcattttaaaacgga 30186409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #60
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 68
Target Start/End: Complemental strand, 32303872 - 32303820
Alignment:
Q  16 attccttaatatgtgtgcaattggctaaaacgacactcattttgaaacggatg 68  Q
    |||||||||| ||||| | ||| | ||||||||||||||||||||| ||||||    
T  32303872 attccttaatctgtgtacgattagttaaaacgacactcattttgaagcggatg 32303820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #61
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 64
Target Start/End: Original strand, 39359104 - 39359152
Alignment:
Q  16 attccttaatatgtgtgcaattggctaaaacgacactcattttgaaacg 64  Q
    |||||||||| | | | |||||| |||||||||||||||||||||||||    
T  39359104 attccttaatttatatacaattgactaaaacgacactcattttgaaacg 39359152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #62
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 36 - 68
Target Start/End: Complemental strand, 51398001 - 51397969
Alignment:
Q  36 ttggctaaaacgacactcattttgaaacggatg 68  Q
    ||||||||||||||||||||||| |||||||||    
T  51398001 ttggctaaaacgacactcattttaaaacggatg 51397969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 36)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 9 - 66
Target Start/End: Complemental strand, 441207 - 441150
Alignment:
Q  9 ttattctattccttaatatgtgtgcaattggctaaaacgacactcattttgaaacgga 66  Q
    |||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  441207 ttattccattccttaatttgtgtgcaattggctaaaacgacactcattttgaaacgga 441150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 9 - 66
Target Start/End: Original strand, 4133199 - 4133256
Alignment:
Q  9 ttattctattccttaatatgtgtgcaattggctaaaacgacactcattttgaaacgga 66  Q
    |||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  4133199 ttattccattccttaatatgtgtgcaattggctaaagcgacactcattttgaaacgga 4133256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 16 - 63
Target Start/End: Complemental strand, 29396649 - 29396602
Alignment:
Q  16 attccttaatatgtgtgcaattggctaaaacgacactcattttgaaac 63  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||    
T  29396649 attccttaatctgtgtgcaattggctaaaacgacactcattttgaaac 29396602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 70
Target Start/End: Original strand, 34225933 - 34225987
Alignment:
Q  16 attccttaatatgtgtgcaattggctaaaacgacactcattttgaaacggatgag 70  Q
    |||||||||| | |||||||||||||||| |||||||||||||||||||||||||    
T  34225933 attccttaatctatgtgcaattggctaaagcgacactcattttgaaacggatgag 34225987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 9 - 66
Target Start/End: Complemental strand, 16807493 - 16807436
Alignment:
Q  9 ttattctattccttaatatgtgtgcaattggctaaaacgacactcattttgaaacgga 66  Q
    |||||| |||| |||||||||||||||||||||||| ||||||||||||| |||||||    
T  16807493 ttattccattcattaatatgtgtgcaattggctaaagcgacactcattttaaaacgga 16807436  T

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Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 9 - 66
Target Start/End: Complemental strand, 16846774 - 16846717
Alignment:
Q  9 ttattctattccttaatatgtgtgcaattggctaaaacgacactcattttgaaacgga 66  Q
    |||||| |||| |||||||||||||||||||||||| ||||||||||||| |||||||    
T  16846774 ttattccattcattaatatgtgtgcaattggctaaagcgacactcattttaaaacgga 16846717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 9 - 66
Target Start/End: Original strand, 30855282 - 30855339
Alignment:
Q  9 ttattctattccttaatatgtgtgcaattggctaaaacgacactcattttgaaacgga 66  Q
    |||||| ||||||||||||| |||||||||| |||| |||||||||||||||||||||    
T  30855282 ttattcaattccttaatatgcgtgcaattggttaaagcgacactcattttgaaacgga 30855339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 9 - 66
Target Start/End: Complemental strand, 43388633 - 43388576
Alignment:
Q  9 ttattctattccttaatatgtgtgcaattggctaaaacgacactcattttgaaacgga 66  Q
    |||||| ||| |||||| |||||||||||||||||| |||||||||||||||||||||    
T  43388633 ttattcaatttcttaatctgtgtgcaattggctaaagcgacactcattttgaaacgga 43388576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 16 - 68
Target Start/End: Original strand, 8774236 - 8774288
Alignment:
Q  16 attccttaatatgtgtgcaattggctaaaacgacactcattttgaaacggatg 68  Q
    ||||||||||||||||||||||| ||||||| ||||||||||| |||||||||    
T  8774236 attccttaatatgtgtgcaattgactaaaacaacactcattttaaaacggatg 8774288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 16 - 68
Target Start/End: Complemental strand, 8789399 - 8789347
Alignment:
Q  16 attccttaatatgtgtgcaattggctaaaacgacactcattttgaaacggatg 68  Q
    ||||||||||||||||||||||| ||||||| ||||||||||| |||||||||    
T  8789399 attccttaatatgtgtgcaattgtctaaaacaacactcatttttaaacggatg 8789347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 16 - 68
Target Start/End: Original strand, 29808997 - 29809049
Alignment:
Q  16 attccttaatatgtgtgcaattggctaaaacgacactcattttgaaacggatg 68  Q
    |||||||||| |||||||||||||||||| |||||||||||||||||| ||||    
T  29808997 attccttaatttgtgtgcaattggctaaagcgacactcattttgaaacagatg 29809049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 16 - 68
Target Start/End: Complemental strand, 45081875 - 45081823
Alignment:
Q  16 attccttaatatgtgtgcaattggctaaaacgacactcattttgaaacggatg 68  Q
    ||||||||||||||||||||||  ||||||||||||||||||| |||||||||    
T  45081875 attccttaatatgtgtgcaattttctaaaacgacactcattttaaaacggatg 45081823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 9 - 64
Target Start/End: Original strand, 14698166 - 14698221
Alignment:
Q  9 ttattctattccttaatatgtgtgcaattggctaaaacgacactcattttgaaacg 64  Q
    |||||| ||| |||||| |||||||||||||||||| |||||||||||||||||||    
T  14698166 ttattcaatttcttaatctgtgtgcaattggctaaagcgacactcattttgaaacg 14698221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 9 - 68
Target Start/End: Complemental strand, 25383461 - 25383402
Alignment:
Q  9 ttattctattccttaatatgtgtgcaattggctaaaacgacactcattttgaaacggatg 68  Q
    |||||| |||||||||| || ||||||||||||||| ||||||||||||| |||||||||    
T  25383461 ttattccattccttaatttgcgtgcaattggctaaagcgacactcattttaaaacggatg 25383402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 16 - 66
Target Start/End: Original strand, 12342277 - 12342327
Alignment:
Q  16 attccttaatatgtgtgcaattggctaaaacgacactcattttgaaacgga 66  Q
    |||||||||||  |||||||||||||||||||||||||||||| |||||||    
T  12342277 attccttaataaatgtgcaattggctaaaacgacactcattttaaaacgga 12342327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 16 - 66
Target Start/End: Original strand, 42970072 - 42970122
Alignment:
Q  16 attccttaatatgtgtgcaattggctaaaacgacactcattttgaaacgga 66  Q
    |||||||||||| |||||||||||||||||||||||| ||||| |||||||    
T  42970072 attccttaatatatgtgcaattggctaaaacgacacttattttaaaacgga 42970122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 9 - 66
Target Start/End: Original strand, 25332748 - 25332805
Alignment:
Q  9 ttattctattccttaatatgtgtgcaattggctaaaacgacactcattttgaaacgga 66  Q
    |||||| |||||||||| ||||||||||| |||||| ||||||||||||| |||||||    
T  25332748 ttattcaattccttaatctgtgtgcaattagctaaagcgacactcattttaaaacgga 25332805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 62
Target Start/End: Original strand, 38809883 - 38809928
Alignment:
Q  17 ttccttaatatgtgtgcaattggctaaaacgacactcattttgaaa 62  Q
    ||||||||| |||||||||||||||||||||| |||||||||||||    
T  38809883 ttccttaatctgtgtgcaattggctaaaacgatactcattttgaaa 38809928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 16 - 68
Target Start/End: Original strand, 7743584 - 7743636
Alignment:
Q  16 attccttaatatgtgtgcaattggctaaaacgacactcattttgaaacggatg 68  Q
    |||| ||||| |||||| ||||||||||| |||||||||||||||||||||||    
T  7743584 attctttaatctgtgtgaaattggctaaagcgacactcattttgaaacggatg 7743636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 12 - 64
Target Start/End: Complemental strand, 43480833 - 43480781
Alignment:
Q  12 ttctattccttaatatgtgtgcaattggctaaaacgacactcattttgaaacg 64  Q
    ||||||| |||||| ||||||||||||  ||||||||||||||||||||||||    
T  43480833 ttctatttcttaatctgtgtgcaattgcttaaaacgacactcattttgaaacg 43480781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 9 - 68
Target Start/End: Original strand, 42005067 - 42005126
Alignment:
Q  9 ttattctattccttaatatgtgtgcaattggctaaaacgacactcattttgaaacggatg 68  Q
    |||||| |||||||||||| |||| |||| |||||||||||||| ||||| |||||||||    
T  42005067 ttattcaattccttaatatatgtgaaattagctaaaacgacacttattttaaaacggatg 42005126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 58
Target Start/End: Original strand, 13562177 - 13562219
Alignment:
Q  16 attccttaatatgtgtgcaattggctaaaacgacactcatttt 58  Q
    ||||||||||||||||||||||| | |||||||||||||||||    
T  13562177 attccttaatatgtgtgcaattgacaaaaacgacactcatttt 13562219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 66
Target Start/End: Complemental strand, 36106372 - 36106322
Alignment:
Q  16 attccttaatatgtgtgcaattggctaaaacgacactcattttgaaacgga 66  Q
    |||||||||||||| ||||||| |||||| ||||||||||||| |||||||    
T  36106372 attccttaatatgtatgcaatttgctaaagcgacactcattttaaaacgga 36106322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 66
Target Start/End: Complemental strand, 40987251 - 40987201
Alignment:
Q  16 attccttaatatgtgtgcaattggctaaaacgacactcattttgaaacgga 66  Q
    |||||||||||||||||||||  |||||| ||||||||||||| |||||||    
T  40987251 attccttaatatgtgtgcaatgagctaaagcgacactcattttaaaacgga 40987201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 66
Target Start/End: Original strand, 42753931 - 42753981
Alignment:
Q  16 attccttaatatgtgtgcaattggctaaaacgacactcattttgaaacgga 66  Q
    |||| |||||||||||| ||||||||||| ||||| |||||||||||||||    
T  42753931 attctttaatatgtgtgtaattggctaaagcgacagtcattttgaaacgga 42753981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 9 - 58
Target Start/End: Complemental strand, 775860 - 775811
Alignment:
Q  9 ttattctattccttaatatgtgtgcaattggctaaaacgacactcatttt 58  Q
    ||||||||||||||||| ||| |||||||||||||| ||||| |||||||    
T  775860 ttattctattccttaatctgtatgcaattggctaaagcgacattcatttt 775811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 5 - 66
Target Start/End: Original strand, 18717249 - 18717310
Alignment:
Q  5 tacattattctattccttaatatgtgtgcaattggctaaaacgacactcattttgaaacgga 66  Q
    |||||||||  |||| ||| | ||||||||||| ||||||||||||||| ||||||||||||    
T  18717249 tacattatttcattcattagtctgtgtgcaattagctaaaacgacactctttttgaaacgga 18717310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 19 - 68
Target Start/End: Original strand, 24775375 - 24775424
Alignment:
Q  19 ccttaatatgtgtgcaattggctaaaacgacactcattttgaaacggatg 68  Q
    ||||||| |||||||||||| |||||||||||||||| || |||||||||    
T  24775375 ccttaatttgtgtgcaattgactaaaacgacactcatcttaaaacggatg 24775424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 9 - 64
Target Start/End: Complemental strand, 10580832 - 10580777
Alignment:
Q  9 ttattctattccttaatatgtgtgcaattggctaaaacgacactcattttgaaacg 64  Q
    |||||| ||||||| ||  |||||||||||||| |||||| |||||||||||||||    
T  10580832 ttattccattccttgatccgtgtgcaattggcttaaacgatactcattttgaaacg 10580777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 11 - 66
Target Start/End: Complemental strand, 14378222 - 14378167
Alignment:
Q  11 attctattccttaatatgtgtgcaattggctaaaacgacactcattttgaaacgga 66  Q
    ||||||||| ||||  ||||||||||| |||||| ||||||||||||| |||||||    
T  14378222 attctattcattaaactgtgtgcaattagctaaagcgacactcattttaaaacgga 14378167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 16 - 59
Target Start/End: Original strand, 38926790 - 38926833
Alignment:
Q  16 attccttaatatgtgtgcaattggctaaaacgacactcattttg 59  Q
    |||| |||||||||||||||||| ||||| ||||||||||||||    
T  38926790 attcattaatatgtgtgcaattgactaaagcgacactcattttg 38926833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 66
Target Start/End: Complemental strand, 4133015 - 4132985
Alignment:
Q  36 ttggctaaaacgacactcattttgaaacgga 66  Q
    |||||||||||||||||||||||||||||||    
T  4133015 ttggctaaaacgacactcattttgaaacgga 4132985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 66
Target Start/End: Complemental strand, 32227980 - 32227930
Alignment:
Q  16 attccttaatatgtgtgcaattggctaaaacgacactcattttgaaacgga 66  Q
    |||||||||| |||||||||||||||||| |||  || |||||||||||||    
T  32227980 attccttaatttgtgtgcaattggctaaagcgatgcttattttgaaacgga 32227930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 58
Target Start/End: Complemental strand, 39866647 - 39866597
Alignment:
Q  9 ttattctattccttaatatgtgtgcaa-ttggctaaaacgacactcatttt 58  Q
    |||||| |||||||||| ||||||||| |||| ||||||||||||||||||    
T  39866647 ttattccattccttaatctgtgtgcaaattggttaaaacgacactcatttt 39866597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 40 - 68
Target Start/End: Original strand, 4840891 - 4840919
Alignment:
Q  40 ctaaaacgacactcattttgaaacggatg 68  Q
    |||||||||||||||||||||||||||||    
T  4840891 ctaaaacgacactcattttgaaacggatg 4840919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 36 - 68
Target Start/End: Complemental strand, 13561984 - 13561952
Alignment:
Q  36 ttggctaaaacgacactcattttgaaacggatg 68  Q
    |||||||||| ||||||||||||||||||||||    
T  13561984 ttggctaaaatgacactcattttgaaacggatg 13561952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0565 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0565
Description:

Target: scaffold0565; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 16 - 66
Target Start/End: Complemental strand, 9629 - 9579
Alignment:
Q  16 attccttaatatgtgtgcaattggctaaaacgacactcattttgaaacgga 66  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  9629 attccttaatatgtgtgtaattggctaaaacgacactcattttgaaacgga 9579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 9 - 59
Target Start/End: Original strand, 62810 - 62860
Alignment:
Q  9 ttattctattccttaatatgtgtgcaattggctaaaacgacactcattttg 59  Q
    |||||| ||||||||||||||||||||||||||||| ||||||||||||||    
T  62810 ttattccattccttaatatgtgtgcaattggctaaagcgacactcattttg 62860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 9 - 66
Target Start/End: Original strand, 1135102 - 1135159
Alignment:
Q  9 ttattctattccttaatatgtgtgcaattggctaaaacgacactcattttgaaacgga 66  Q
    |||||| ||||||||||||||||||||||||||||| | ||||| |||||||||||||    
T  1135102 ttattccattccttaatatgtgtgcaattggctaaagcaacacttattttgaaacgga 1135159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 9 - 68
Target Start/End: Complemental strand, 34513634 - 34513575
Alignment:
Q  9 ttattctattccttaatatgtgtgcaattggctaaaacgacactcattttgaaacggatg 68  Q
    |||||| ||| |||||||||||||||||| |||||||||||||| ||||| |||||||||    
T  34513634 ttattccatttcttaatatgtgtgcaattagctaaaacgacacttattttaaaacggatg 34513575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 66
Target Start/End: Complemental strand, 31275609 - 31275560
Alignment:
Q  17 ttccttaatatgtgtgcaattggctaaaacgacactcattttgaaacgga 66  Q
    ||||||||| |||||||||||||||||||| ||||| |||||||||||||    
T  31275609 ttccttaatctgtgtgcaattggctaaaacaacacttattttgaaacgga 31275560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 9 - 64
Target Start/End: Original strand, 234202 - 234257
Alignment:
Q  9 ttattctattccttaatatgtgtgcaattggctaaaacgacactcattttgaaacg 64  Q
    |||||| |||| |||||  |||||||||||| ||||||||||||||||||||||||    
T  234202 ttattccattctttaatccgtgtgcaattggttaaaacgacactcattttgaaacg 234257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 9 - 64
Target Start/End: Original strand, 19675155 - 19675210
Alignment:
Q  9 ttattctattccttaatatgtgtgcaattggctaaaacgacactcattttgaaacg 64  Q
    |||||| |||||||||||||||| ||||||| |||| ||||||||||||| |||||    
T  19675155 ttattcaattccttaatatgtgttcaattggttaaagcgacactcattttaaaacg 19675210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 25 - 68
Target Start/End: Complemental strand, 24163673 - 24163630
Alignment:
Q  25 tatgtgtgcaattggctaaaacgacactcattttgaaacggatg 68  Q
    |||||||||||||||||||||||||||||| ||| |||||||||    
T  24163673 tatgtgtgcaattggctaaaacgacactcactttaaaacggatg 24163630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 11 - 66
Target Start/End: Complemental strand, 29713380 - 29713325
Alignment:
Q  11 attctattccttaatatgtgtgcaattggctaaaacgacactcattttgaaacgga 66  Q
    |||| ||||||||||| ||||||||||| ||||| ||||||||||||| |||||||    
T  29713380 attccattccttaatacgtgtgcaattgactaaagcgacactcattttaaaacgga 29713325  T

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Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 62
Target Start/End: Original strand, 9940835 - 9940877
Alignment:
Q  20 cttaatatgtgtgcaattggctaaaacgacactcattttgaaa 62  Q
    |||||| |||||||||||||||||||| | |||||||||||||    
T  9940835 cttaatctgtgtgcaattggctaaaacaatactcattttgaaa 9940877  T

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Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 58
Target Start/End: Complemental strand, 10520359 - 10520317
Alignment:
Q  16 attccttaatatgtgtgcaattggctaaaacgacactcatttt 58  Q
    |||||||||||||||| ||||||| |||| |||||||||||||    
T  10520359 attccttaatatgtgtacaattggttaaagcgacactcatttt 10520317  T

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Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 66
Target Start/End: Original strand, 17246767 - 17246797
Alignment:
Q  36 ttggctaaaacgacactcattttgaaacgga 66  Q
    |||||||||||||||||||||||||||||||    
T  17246767 ttggctaaaacgacactcattttgaaacgga 17246797  T

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Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 66
Target Start/End: Complemental strand, 29927199 - 29927169
Alignment:
Q  36 ttggctaaaacgacactcattttgaaacgga 66  Q
    |||||||||||||||||||||||||||||||    
T  29927199 ttggctaaaacgacactcattttgaaacgga 29927169  T

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Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 66
Target Start/End: Original strand, 30627265 - 30627315
Alignment:
Q  16 attccttaatatgtgtgcaattggctaaaacgacactcattttgaaacgga 66  Q
    |||| ||||| |||||||||||  ||||||||||||||||||| |||||||    
T  30627265 attcattaatttgtgtgcaattatctaaaacgacactcattttaaaacgga 30627315  T

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Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 60
Target Start/End: Original strand, 8052522 - 8052562
Alignment:
Q  20 cttaatatgtgtgcaattggctaaaacgacactcattttga 60  Q
    |||||| |||||||||||| ||||||||||| |||||||||    
T  8052522 cttaatttgtgtgcaattgactaaaacgacattcattttga 8052562  T

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Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 60
Target Start/End: Complemental strand, 12828650 - 12828606
Alignment:
Q  16 attccttaatatgtgtgcaattggctaaaacgacactcattttga 60  Q
    |||| ||||| |||||||||||||||| |||||| ||||||||||    
T  12828650 attcattaatttgtgtgcaattggctacaacgacgctcattttga 12828606  T

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Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 28 - 68
Target Start/End: Original strand, 25932826 - 25932866
Alignment:
Q  28 gtgtgcaattggctaaaacgacactcattttgaaacggatg 68  Q
    ||||| ||||||||||||||||||| ||||| |||||||||    
T  25932826 gtgtgtaattggctaaaacgacacttattttaaaacggatg 25932866  T

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Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 36 - 68
Target Start/End: Complemental strand, 32429277 - 32429245
Alignment:
Q  36 ttggctaaaacgacactcattttgaaacggatg 68  Q
    ||||||||||||||||||||||| |||||||||    
T  32429277 ttggctaaaacgacactcattttaaaacggatg 32429245  T

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Target: scaffold0110 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 9 - 68
Target Start/End: Complemental strand, 24716 - 24657
Alignment:
Q  9 ttattctattccttaatatgtgtgcaattggctaaaacgacactcattttgaaacggatg 68  Q
    |||||| |||||||||||||||| ||| |||||||| ||||||||||||| |||||||||    
T  24716 ttattccattccttaatatgtgtacaaatggctaaagcgacactcattttaaaacggatg 24657  T

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Target: scaffold0110; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 36 - 68
Target Start/End: Original strand, 24902 - 24934
Alignment:
Q  36 ttggctaaaacgacactcattttgaaacggatg 68  Q
    |||| ||||||||||||||||||||||||||||    
T  24902 ttggataaaacgacactcattttgaaacggatg 24934  T

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Target: scaffold0072 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0072
Description:

Target: scaffold0072; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 11 - 66
Target Start/End: Complemental strand, 12056 - 12001
Alignment:
Q  11 attctattccttaatatgtgtgcaattggctaaaacgacactcattttgaaacgga 66  Q
    |||| |||||||||| | ||||||||| |||||| |||||||||||||||||||||    
T  12056 attccattccttaatctctgtgcaattcgctaaagcgacactcattttgaaacgga 12001  T

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Target: scaffold0060 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 66
Target Start/End: Original strand, 31727 - 31777
Alignment:
Q  16 attccttaatatgtgtgcaattggctaaaacgacactcattttgaaacgga 66  Q
    |||| ||||| |||||||||||||||| ||| |||||||||||||||||||    
T  31727 attcgttaatttgtgtgcaattggctacaacaacactcattttgaaacgga 31777  T

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Target: scaffold0015 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 9 - 66
Target Start/End: Complemental strand, 21057 - 21000
Alignment:
Q  9 ttattctattccttaatatgtgtgcaattggctaaaacgacactcattttgaaacgga 66  Q
    ||||| ||||||||||| | |||||||||||||||| ||||||| ||||| |||||||    
T  21057 ttattttattccttaatctatgtgcaattggctaaagcgacactaattttaaaacgga 21000  T

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Target: scaffold0007 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 16 - 69
Target Start/End: Original strand, 158273 - 158325
Alignment:
Q  16 attccttaatatgtgtgcaattggctaaaacgacactcattttgaaacggatga 69  Q
    |||| ||||| ||||| |||||||||||||||||||||||||| ||||||||||    
T  158273 attctttaatttgtgt-caattggctaaaacgacactcattttaaaacggatga 158325  T

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Target: scaffold0009 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 58
Target Start/End: Original strand, 62990 - 63042
Alignment:
Q  6 acattattctattccttaatatgtgtgcaattggctaaaacgacactcatttt 58  Q
    ||||||||| |||| ||||| | ||||||||||||||||| ||||||||||||    
T  62990 acattattccattcattaatctatgtgcaattggctaaaatgacactcatttt 63042  T

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Target: scaffold0758 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0758
Description:

Target: scaffold0758; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 66
Target Start/End: Complemental strand, 6296 - 6246
Alignment:
Q  16 attccttaatatgtgtgcaattggctaaaacgacactcattttgaaacgga 66  Q
    ||||||||||  |||||||||| ||||||  ||||||||||||||||||||    
T  6296 attccttaatccgtgtgcaattagctaaagtgacactcattttgaaacgga 6246  T

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Target: scaffold0047 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 66
Target Start/End: Original strand, 70616 - 70646
Alignment:
Q  36 ttggctaaaacgacactcattttgaaacgga 66  Q
    |||||||||||||||||||||||||||||||    
T  70616 ttggctaaaacgacactcattttgaaacgga 70646  T

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Target: scaffold0003 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 62
Target Start/End: Original strand, 321904 - 321957
Alignment:
Q  9 ttattctattccttaatatgtgtgcaattggctaaaacgacactcattttgaaa 62  Q
    |||||| |||||||||   |||||||||| |||||| |||||||||||||||||    
T  321904 ttattccattccttaacccgtgtgcaattagctaaagcgacactcattttgaaa 321957  T

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Target: scaffold2107 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold2107
Description:

Target: scaffold2107; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 36 - 68
Target Start/End: Original strand, 674 - 706
Alignment:
Q  36 ttggctaaaacgacactcattttgaaacggatg 68  Q
    ||||||||||||||| |||||||||||||||||    
T  674 ttggctaaaacgacattcattttgaaacggatg 706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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