View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16380_low_13 (Length: 379)
Name: NF16380_low_13
Description: NF16380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16380_low_13 |
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| [»] scaffold0039 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 12 - 360
Target Start/End: Original strand, 45845629 - 45845977
Alignment:
| Q |
12 |
atgaagctacaagagagtcctacaattgctgaaagttttgcttttgatggcttttgagcaccaagtttgttaccaactctagtggaaacactaaaactta |
111 |
Q |
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| T |
45845629 |
atgaagctacaagtgagtcctacaattgctgaaagttttgcttttgatggcttttgagcaccaagtttgttaccaactctagtggaaacactaaaactta |
45845728 |
T |
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| Q |
112 |
ttgatgatggaaaaatatatagcaaagaagtagtttgaatcaaaattcccatagaagcaacggttgctcttggatttatcaacaaaccacataacaagat |
211 |
Q |
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| T |
45845729 |
ttgatgatggaaaaatatatagcaaagaagtagtttgaatcaaaattcccatagaagcaacggttgctcttggatttatcaacaaaccacataacaaaat |
45845828 |
T |
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| Q |
212 |
catgatttcataccaccaccattcaaggcaaacagaaagacaacttggtacagctaaattaagaagtgatttccattgtttgaaacattgtgatgaaaaa |
311 |
Q |
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| T |
45845829 |
catgatttcataccaccaccattcaaggcaaacagaaagacaacttggtacagctaaattaagaagtgatttccattgtttgaaacattgtgatgaaaaa |
45845928 |
T |
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| Q |
312 |
ccaccccatgttttcttgtgtgtgccagagaaaactatgtaaagtatca |
360 |
Q |
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| T |
45845929 |
ccaccccatgttttcttgtgcgtgccagagaaaactatgtaaagtatca |
45845977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 72; Significance: 1e-32; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 25 - 340
Target Start/End: Complemental strand, 2990611 - 2990296
Alignment:
| Q |
25 |
agagtcctacaattgctgaaagttttgcttttgatggcttttgagcaccaagtttgttaccaactctagtggaaacactaaaacttattgatgatggaaa |
124 |
Q |
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| T |
2990611 |
agagtcctactattgctgcaagttttgctttttgtggattttcagcaccaagttcatttccaactcttgttgaaacaccaaaactcaaagaagaaggaaa |
2990512 |
T |
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| Q |
125 |
aatatatagcaaagaagtagtttgaatcaaaattcccatagaagcaacggttgctcttggatttatcaacaaaccacataacaagatcatgatttcatac |
224 |
Q |
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| T |
2990511 |
aatgtatatcaatgcagtggtttgaatcaacacacccatagatgcaacagttgcatgtggattaagcaataatccacaaagcaaaatcatgatttcgtac |
2990412 |
T |
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| Q |
225 |
caccaccattcaaggcaaacagaaagacaacttggtacagctaaattaagaagtgatttccattgtttgaaacattgtgatgaaaaaccaccccatgttt |
324 |
Q |
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| T |
2990411 |
caccaccattcgagacaaaccgaaatgcagcttggaattgctaaattcaaaagcgatttccatcctttgaaacaagcagaggaaattccactccatgttt |
2990312 |
T |
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| Q |
325 |
tcttgtgtgtgccaga |
340 |
Q |
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| T |
2990311 |
tcttgtgtgttccaga |
2990296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 96 - 249
Target Start/End: Original strand, 28505699 - 28505852
Alignment:
| Q |
96 |
gaaacactaaaacttattgatgatggaaaaatatatagcaaagaagtagtttgaatcaaaattcccatagaagcaacggttgctcttggatttatcaaca |
195 |
Q |
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||||||| || ||| | |||||||||||||| ||| | |||||| || |||||||| | |||||||| ||||||| |||||| ||||||| | ||| | |
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| T |
28505699 |
gaaacaccaagactaagtgatgatggaaaaacataaaccaaagatgttgtttgaataagtattcccattgaagcaattgttgcttttggattaaccaaaa |
28505798 |
T |
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| Q |
196 |
aaccacataacaagatcatgatttcataccaccaccattcaaggcaaacagaaa |
249 |
Q |
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| T |
28505799 |
gtccacacatcattatcatgaactcataccaccaccattcgagacaaaccgaaa |
28505852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0039 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0039
Description:
Target: scaffold0039; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 12 - 104
Target Start/End: Complemental strand, 24488 - 24396
Alignment:
| Q |
12 |
atgaagctacaagagagtcctacaattgctgaaagttttgcttttgatggcttttgagcaccaagtttgttaccaactctagtggaaacacta |
104 |
Q |
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|||||||| |||| |||||| ||||||||||||||||||||||||||||||||| ||||| | ||||||||||||| || ||||||||| |
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| T |
24488 |
atgaagctgaaagaaagtcctgaaattgctgaaagttttgcttttgatggcttttgtgcacctatcatgttaccaactcttgttgaaacacta |
24396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 84 - 249
Target Start/End: Complemental strand, 51875145 - 51874980
Alignment:
| Q |
84 |
ccaactctagtggaaacactaaaacttattgatgatggaaaaatatatagcaaagaagtagtttgaatcaaaattcccatagaagcaacggttgctcttg |
183 |
Q |
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| T |
51875145 |
ccaactctagttgaaacaccaaaactaagagaagatggaaaaacataaaccaaagaagttgtttgaataagaatacccattgaagaaatggttgactttg |
51875046 |
T |
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| Q |
184 |
gatttatcaacaaaccacataacaagatcatgatttcataccaccaccattcaaggcaaacagaaa |
249 |
Q |
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| || | ||| | ||||| || | ||||||| |||||||||||||||||| | |||||||||| |
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| T |
51875045 |
ggttgaccaaaagtccacacaaaattatcatgagttcataccaccaccattctaaacaaacagaaa |
51874980 |
T |
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