View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16380_low_14 (Length: 369)
Name: NF16380_low_14
Description: NF16380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16380_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 319; Significance: 1e-180; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 16 - 358
Target Start/End: Original strand, 39610809 - 39611151
Alignment:
| Q |
16 |
aaagtaacatggggttacagccaggatcaagaggactaccctttaacctcagttttgtttgtttgtgttgactatatatatattcagatgaagagtagag |
115 |
Q |
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| T |
39610809 |
aaagtaacatgggcttacagccaggatcaggaggactacccttcaacctcagttttgtttgtttgtgttggctatatatattttcagatgaagagtagag |
39610908 |
T |
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| Q |
116 |
actctataagaatgaagtgaactacccacccaagagtgttaacaatcccccttctatcttattgaagcatttattttttcaaaagaaaccaaaacatggt |
215 |
Q |
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| T |
39610909 |
actctataagaatgaagtgaactacccacccaagagtgttaacaatcccccttctatcttattgaagcatttattttttcaaaagaaaccaaaacatggt |
39611008 |
T |
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| Q |
216 |
agtgaaggtttatggtccccattgtgcctcagccaaacgtgtgttggtttgtcttgttgagaaggaaatagaatttgaggttgtccctattaatgtcttg |
315 |
Q |
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| T |
39611009 |
agtgaaggtttatggtccccattgtgcctcagccaaacgtgtgttggtttgtcttgttgagaaggaaatagaatttgaggttgtccctattaatgtcttg |
39611108 |
T |
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| Q |
316 |
aagggtgaacacaaggatcctgagtacctcaaatcacaggttc |
358 |
Q |
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| T |
39611109 |
aagggtgaacacaaggatcctgagtacctcaaattacaggttc |
39611151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 193 - 358
Target Start/End: Original strand, 39600545 - 39600710
Alignment:
| Q |
193 |
ttcaaaagaaaccaaaacatggtagtgaaggtttatggtccccattgtgcctcagccaaacgtgtgttggtttgtcttgttgagaaggaaatagaatttg |
292 |
Q |
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||||| |||||||||| ||||||||||||||| ||||||||||| ||||||||||||||||| |||||||||||||||||||||||| |||| ||||||| |
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| T |
39600545 |
ttcaatagaaaccaaaccatggtagtgaaggtgtatggtccccactgtgcctcagccaaacgagtgttggtttgtcttgttgagaagaaaatcgaatttg |
39600644 |
T |
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| Q |
293 |
aggttgtccctattaatgtcttgaagggtgaacacaaggatcctgagtacctcaaatcacaggttc |
358 |
Q |
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| T |
39600645 |
aggttgtccctgttaatgtcttggagggtgaacacaaagatcctgagtacctcaaattacaggttc |
39600710 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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