View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16380_low_17 (Length: 317)
Name: NF16380_low_17
Description: NF16380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16380_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 278; Significance: 1e-155; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 12 - 301
Target Start/End: Original strand, 27983708 - 27983996
Alignment:
| Q |
12 |
catcatcatgtccaatagaagtactttgaaagaatgctttgagaggagtttgtttgggctaccgggtagtttttctgattttgttaaaaacgtcaaggca |
111 |
Q |
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| T |
27983708 |
catcttcatgtccaatagaagtactttgaaagaatgctttgagaggagtttgtttgggctaccgggtagtttttctgattttgttaaaaacgtcaaggca |
27983807 |
T |
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| Q |
112 |
ggaatgattttgttccttttcgaatttgaagagaggaaacttcatggggtttttgaagcaataacagatggtggcatgaatatttctcctcatgcatatg |
211 |
Q |
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| T |
27983808 |
ggaatgattttgttccttttcgaatttgaagagaggaaacttcatggggtttttgaagcaataacagatggtggcatgaatatttctcctcatgcatatg |
27983907 |
T |
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| Q |
212 |
tttcatctggacagcagttccctgcacaggttgttatctttactttcatattatgccttgcattatttcaattcaaattcacacagattt |
301 |
Q |
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| T |
27983908 |
tttcatctggacagcagttccctgcacaggttgttatctttactttcatattatg-cttgcattatttcaattcaaattcacacagattt |
27983996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 12 - 301
Target Start/End: Original strand, 28070238 - 28070526
Alignment:
| Q |
12 |
catcatcatgtccaatagaagtactttgaaagaatgctttgagaggagtttgtttgggctaccgggtagtttttctgattttgttaaaaacgtcaaggca |
111 |
Q |
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| T |
28070238 |
catcttcatgtccaatagaagtactttgaaagaatgctttgagaggagtttgtttgggctaccgggtagtttttctgattttgttaaaaacgtcaaggca |
28070337 |
T |
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| Q |
112 |
ggaatgattttgttccttttcgaatttgaagagaggaaacttcatggggtttttgaagcaataacagatggtggcatgaatatttctcctcatgcatatg |
211 |
Q |
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| T |
28070338 |
ggaatgattttgttccttttcgaatttgaagagaggaaacttcatggggtttttgaagcaataacagatggtggcatgaatatttctcctcatgcatatg |
28070437 |
T |
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| Q |
212 |
tttcatctggacagcagttccctgcacaggttgttatctttactttcatattatgccttgcattatttcaattcaaattcacacagattt |
301 |
Q |
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| T |
28070438 |
tttcatctggacagcagttccctgcacaggttgttatctttactttcatattatg-cttgcattatttcaattcaaattcacacagattt |
28070526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 17 - 301
Target Start/End: Complemental strand, 26417256 - 26416972
Alignment:
| Q |
17 |
tcatgtccaatagaagtactttgaaagaatgctttgagaggagtttgtttgggctaccgggtagtttttctgattttgttaaaaacgtcaaggcaggaat |
116 |
Q |
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|||||||||||| |||||||||||||||||||||||||||| |||||||||| |||||||| |||||||||||||| |||||||||||||||||||||| |
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| T |
26417256 |
tcatgtccaataagagtactttgaaagaatgctttgagaggaatttgtttgggttaccgggtggtttttctgattttattaaaaacgtcaaggcaggaat |
26417157 |
T |
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| Q |
117 |
gattttgttccttttcgaatttgaagagaggaaacttcatggggtttttgaagcaataacagatggtggcatgaatatttctcctcatgcatatgtttca |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| |||||||| ||| |||||| ||||||||||||| |
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| T |
26417156 |
gattttgttccttttcgaatttgaagagaggaaacttcatggggttttttaagcgataacagatggcggcatgaacattgctcctcgtgcatatgtttca |
26417057 |
T |
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| Q |
217 |
tctggacagcagttccctgcacaggttgttatctttactttcatattatgccttgcattatttcaa-ttcaaattcacacagattt |
301 |
Q |
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|||||| |||||||||||||||||||||| |||||||||||||||||||| ||| | ||||||||| ||||||||| ||||||||| |
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| T |
26417056 |
tctggaaagcagttccctgcacaggttgtaatctttactttcatattatg-ctttccttatttcaatttcaaattcgcacagattt |
26416972 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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