View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16380_low_19 (Length: 316)
Name: NF16380_low_19
Description: NF16380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16380_low_19 |
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Alignment Details
Target: chr3 (Bit Score: 162; Significance: 2e-86; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 125 - 302
Target Start/End: Original strand, 28195866 - 28196043
Alignment:
| Q |
125 |
ttaaaactttttaatgatttagtggtcacacacttaaacaggcggtgtataaactgaaatttttactaattgtgtttatctgattaataatatgtgcatc |
224 |
Q |
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| T |
28195866 |
ttaaaacttcttaatgatttagtggtcacacacttaaacaggcggtgtataaactgaaatttttactaattgtatttatctaattaataatatgtgcatc |
28195965 |
T |
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| Q |
225 |
attcgtaagttgttatttttcaaattacttttacgatacagatagttaatcaatggttaatttggtattgttgttaat |
302 |
Q |
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| T |
28195966 |
attcgtaagttgttatttttcaaattacttttatgatacagatagttaatcaatggttaatttggtattgttgttaat |
28196043 |
T |
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Target: chr3; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 16 - 119
Target Start/End: Original strand, 28193696 - 28193799
Alignment:
| Q |
16 |
atataattagttgtttaatacccttgagagcataagttagcatttgccnnnnnnncatatgcgccagttaaaagtgattagtataaaagttaaaacttta |
115 |
Q |
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| T |
28193696 |
atataattagttgtctaatgcccttgagagcataagttagcatttgccaaaaaaacatgtgtgtcagttaaaagtggttagtataaaagttaaaacttta |
28193795 |
T |
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| Q |
116 |
tccc |
119 |
Q |
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|||| |
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| T |
28193796 |
tccc |
28193799 |
T |
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