View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16380_low_22 (Length: 293)

Name: NF16380_low_22
Description: NF16380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16380_low_22
NF16380_low_22
[»] chr7 (12 HSPs)
chr7 (22-291)||(29578178-29578447)
chr7 (22-280)||(29582347-29582605)
chr7 (220-269)||(8537454-8537503)
chr7 (22-137)||(8609464-8609579)
chr7 (220-273)||(8383577-8383630)
chr7 (220-267)||(8601394-8601441)
chr7 (25-99)||(8575911-8575985)
chr7 (220-273)||(8569725-8569778)
chr7 (226-291)||(8581096-8581161)
chr7 (115-156)||(17259764-17259805)
chr7 (115-156)||(17267467-17267508)
chr7 (22-62)||(27846612-27846652)
[»] chr2 (1 HSPs)
chr2 (22-139)||(43624957-43625074)


Alignment Details
Target: chr7 (Bit Score: 254; Significance: 1e-141; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 22 - 291
Target Start/End: Original strand, 29578178 - 29578447
Alignment:
Q  22 caggctgctttgttgattgatggcatcaagaatgttccaaatttggtcttgtgagatattacacccttgtcgcttggtatatggacaaaaggagatgtca 121  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  29578178 caggctgctttgttgattgatggcattaagaatgttccaaatttggtcttgcgagatattacacccttgtcgcttggtatatggacaaaaggagatgtca 29578277  T
Q  122 tgagtgtagtgattcctaagaacactccaattcctattaagatgactgaggatagatgtaagacaagtgtagataaccaacttggtgtatccatccatgt 221  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29578278 tgagtgtagtgattcctaagaacactccaattcctattaagatgactgaggatagatgtaagacaagtgtagataaccaacttggtgtatccatccatgt 29578377  T
Q  222 ttatgagggtgagagaataaaagccagtgagaacaacttgttgggtttgtttcgtctctctgctcctcct 291  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||    
T  29578378 ttatgagggtgagagaataaaagccagtgagaacaacttgttgggtttgtttcgtctctttgttcctcct 29578447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 22 - 280
Target Start/End: Original strand, 29582347 - 29582605
Alignment:
Q  22 caggctgctttgttgattgatggcatcaagaatgttccaaatttggtcttgtgagatattacacccttgtcgcttggtatatggacaaaaggagatgtca 121  Q
    |||||||||||| ||||||| |||||  ||||||||||| ||||  |||||  |||||||||||||||||| ||||||||||  |||||||||||| |||    
T  29582347 caggctgctttgctgattgaaggcattgagaatgttccagattttatcttgcaagatattacacccttgtcacttggtatatcaacaaaaggagatatca 29582446  T
Q  122 tgagtgtagtgattcctaagaacactccaattcctattaagatgactgaggatagatgtaagacaagtgtagataaccaacttggtgtatccatccatgt 221  Q
    ||||||| |||||||||| ||||||||| ||||||   |||||||| || || ||||||||||||||||||||||||||| ||||||| || ||  ||||    
T  29582447 tgagtgtggtgattcctaggaacactcccattcctgccaagatgacagaagaaagatgtaagacaagtgtagataaccaatttggtgtctcaattaatgt 29582546  T
Q  222 ttatgagggtgagagaataaaagccagtgagaacaacttgttgggtttgtttcgtctct 280  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||    
T  29582547 ttatgagggtgagagaataaaagccagtgagaacaacttgctgggtttgtttagtctct 29582605  T

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Target: chr7; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 220 - 269
Target Start/End: Complemental strand, 8537503 - 8537454
Alignment:
Q  220 gtttatgagggtgagagaataaaagccagtgagaacaacttgttgggttt 269  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||    
T  8537503 gtttatgagggtgagagaatgaaagccagtgagaacaacttgttgggttt 8537454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 22 - 137
Target Start/End: Complemental strand, 8609579 - 8609464
Alignment:
Q  22 caggctgctttgttgattgatggcatcaagaatgttccaaatttggtcttgtgagatattacacccttgtcgcttggtatatggacaaaaggagatgtca 121  Q
    |||||||||||||||  ||| ||||||||    |||||||| |||||  || ||||| ||||||| ||||| |||||||||| || |||||||||||| |    
T  8609579 caggctgctttgttgggtgaaggcatcaaatcagttccaaacttggtgctgcgagatgttacacctttgtcacttggtatatcgataaaaggagatgtga 8609480  T
Q  122 tgagtgtagtgattcc 137  Q
    |||||||| |||||||    
T  8609479 tgagtgtattgattcc 8609464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 220 - 273
Target Start/End: Original strand, 8383577 - 8383630
Alignment:
Q  220 gtttatgagggtgagagaataaaagccagtgagaacaacttgttgggtttgttt 273  Q
    |||||||||||||||||| | ||||| | ||||||||||||||| |||||||||    
T  8383577 gtttatgagggtgagagattgaaagctaatgagaacaacttgttaggtttgttt 8383630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 220 - 267
Target Start/End: Complemental strand, 8601441 - 8601394
Alignment:
Q  220 gtttatgagggtgagagaataaaagccagtgagaacaacttgttgggt 267  Q
    |||||||| || |||||| ||||||| |||||||||||||||||||||    
T  8601441 gtttatgaaggcgagagattaaaagcaagtgagaacaacttgttgggt 8601394  T

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Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 99
Target Start/End: Complemental strand, 8575985 - 8575911
Alignment:
Q  25 gctgctttgttgattgatggcatcaagaatgttccaaatttggtcttgtgagatattacacccttgtcgcttggt 99  Q
    ||||||||||||| ||| ||||  |||||||||||||| ||||| ||  ||||| ||||||| |||||| |||||    
T  8575985 gctgctttgttgagtgaaggcagtaagaatgttccaaacttggtgttacgagatgttacaccgttgtcgtttggt 8575911  T

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Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 220 - 273
Target Start/End: Complemental strand, 8569778 - 8569725
Alignment:
Q  220 gtttatgagggtgagagaataaaagccagtgagaacaacttgttgggtttgttt 273  Q
    |||||||||||||||||| ||||||  ||||| ||||||||| | |||||||||    
T  8569778 gtttatgagggtgagagattaaaagatagtgacaacaacttgcttggtttgttt 8569725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 291
Target Start/End: Complemental strand, 8581161 - 8581096
Alignment:
Q  226 gagggtgagagaataaaagccagtgagaacaacttgttgggtttgtttcgtctctctgctcctcct 291  Q
    ||||||||||||| || ||| ||||| ||||||||| |||||||||||  | |||||| |||||||    
T  8581161 gagggtgagagaacaagagcaagtgataacaacttgctgggtttgtttgatttctctgttcctcct 8581096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 156
Target Start/End: Complemental strand, 17259805 - 17259764
Alignment:
Q  115 gatgtcatgagtgtagtgattcctaagaacactccaattcct 156  Q
    |||||||||||||| |||||||||| ||||||| ||||||||    
T  17259805 gatgtcatgagtgtggtgattcctaggaacacttcaattcct 17259764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 156
Target Start/End: Complemental strand, 17267508 - 17267467
Alignment:
Q  115 gatgtcatgagtgtagtgattcctaagaacactccaattcct 156  Q
    |||||||||||||| |||||||||| ||||||| ||||||||    
T  17267508 gatgtcatgagtgtggtgattcctaggaacacttcaattcct 17267467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 62
Target Start/End: Original strand, 27846612 - 27846652
Alignment:
Q  22 caggctgctttgttgattgatggcatcaagaatgttccaaa 62  Q
    |||||||||||||||| ||||| ||| ||||||||||||||    
T  27846612 caggctgctttgttgagtgatgacattaagaatgttccaaa 27846652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 139
Target Start/End: Complemental strand, 43625074 - 43624957
Alignment:
Q  22 caggctgctttgttgattgatggcatcaagaatgttccaaatttggtcttgtgagatattacacccttgtcgcttggtatatggacaaaaggagatgtca 121  Q
    ||||||||| | |||| | | ||||| |||||||||||||| |||||  || ||||| |||| || ||||| |||||||| |  |  || |||| |||||    
T  43625074 caggctgctattttgagtaaaggcattaagaatgttccaaaattggtgctgcgagatgttacccctttgtcacttggtatcttaaacaagggaggtgtca 43624975  T
Q  122 tgagtgtagtgattccta 139  Q
    ||||||| ||||||||||    
T  43624974 tgagtgtggtgattccta 43624957  T

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