View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16380_low_27 (Length: 265)
Name: NF16380_low_27
Description: NF16380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16380_low_27 |
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Alignment Details
Target: chr3 (Bit Score: 138; Significance: 3e-72; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 19 - 160
Target Start/End: Original strand, 25572545 - 25572686
Alignment:
| Q |
19 |
agcttgaccatagaaggattaactgattcttctccgtccccaagtttcaaacataaatagaccctaaaaacaatctttcattcccacaaaatttcattcc |
118 |
Q |
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| T |
25572545 |
agcttgaccatagaaggattaactgattcttctccatccccaagtttcaaacataaatagaccctaaaaacaatctttcattcccacaaaatttcattcc |
25572644 |
T |
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| Q |
119 |
attttcttttatattccttagggaagagtggtaaatcatgaa |
160 |
Q |
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| T |
25572645 |
attttcttttatattccttagggaagagtggtaaatcatgaa |
25572686 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 223 - 265
Target Start/End: Original strand, 25572749 - 25572791
Alignment:
| Q |
223 |
aaaaaacaaacttgaaacaagcttcttcgacctttctaacttc |
265 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25572749 |
aaaaaacaaacttgaaacaagcttcttcgacctttctaacttc |
25572791 |
T |
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