View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16380_low_29 (Length: 254)
Name: NF16380_low_29
Description: NF16380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16380_low_29 |
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Alignment Details
Target: chr2 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 12 - 234
Target Start/End: Complemental strand, 41174415 - 41174193
Alignment:
| Q |
12 |
atgaagagtgctgcaatattaataataacatatcttgtttaccaaagacttgttcatcatgggagtataattccacagactcactatgggtgatgggtga |
111 |
Q |
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| T |
41174415 |
atgaagagtgctgcaatattaataataacatatcttgtttaccaaagacttcttcatcatgggagtataattccacagactcactatgggtgatgggtga |
41174316 |
T |
|
| Q |
112 |
agaaagtatgttattccctatggctcctatgagtgatgacccttatttttctggttatgctaattactaattaggattctttttccaaatcaatattttg |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41174315 |
agaaagtatgttattccctatggctcctatgagtgatgacccttatttttctggctatgctaattactaattaggattctttttccaaatcaatattttg |
41174216 |
T |
|
| Q |
212 |
tttgttcataccatcatgtgtgc |
234 |
Q |
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||||||||||||||||||||||| |
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| T |
41174215 |
tttgttcataccatcatgtgtgc |
41174193 |
T |
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