View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16380_low_30 (Length: 251)
Name: NF16380_low_30
Description: NF16380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16380_low_30 |
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| [»] chr1 (1 HSPs) |
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| [»] scaffold0039 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 8 - 251
Target Start/End: Original strand, 45845403 - 45845646
Alignment:
| Q |
8 |
tccaagaatataaaaacaaccaaaattgatatttgcacctactttaggccttgctgttcctcttaacaccccacaacctgttgtttgtggacaatttcca |
107 |
Q |
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| T |
45845403 |
tccaacaatgtaaaaacaaccaaaattgatatttgcacctactttaggccttgctgttcctcttaacaccccacaacctgttgtttgtggacaatttcca |
45845502 |
T |
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| Q |
108 |
agttcacatagccctattaaaggtaacactaaagatgtaatttttattatctctttgtcttcagtgaacatgctagcccaaatgtttctaaccattacag |
207 |
Q |
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| T |
45845503 |
agttcacatagccctattaaaggtaacactaaagatgtaatttttattatctctttgtcttcagtgaacatgctagcccaaatgtttctaaccattacag |
45845602 |
T |
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| Q |
208 |
caaaaaccaaagcaaacacacctaaaatgaagctacaagagagt |
251 |
Q |
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| T |
45845603 |
caaaaaccaaagcaaacacacctaaaatgaagctacaagtgagt |
45845646 |
T |
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Target: scaffold0039 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0039
Description:
Target: scaffold0039; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 17 - 117
Target Start/End: Complemental strand, 24705 - 24605
Alignment:
| Q |
17 |
ataaaaacaaccaaaattgatatttgcacctactttaggccttgctgttcctcttaacaccccacaacctgttgtttgtggacaatttccaagttcacat |
116 |
Q |
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|||||||||||| || |||||||| ||||| ||||||||||||||||||||||| | || ||||| ||||||||||| ||||| || || ||||||||| |
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| T |
24705 |
ataaaaacaacctaagttgatattagcaccaactttaggccttgctgttcctctaagaacaccacagcctgttgtttgaggacagttacctagttcacat |
24606 |
T |
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| Q |
117 |
a |
117 |
Q |
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| T |
24605 |
a |
24605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 17 - 124
Target Start/End: Complemental strand, 2990841 - 2990734
Alignment:
| Q |
17 |
ataaaaacaaccaaaattgatatttgcacctactttaggccttgctgttcctcttaacaccccacaacctgttgtttgtggacaatttccaagttcacat |
116 |
Q |
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|||||||||||| ||||| |||||||| |||| ||| ||||| || ||||| || || || |||||| | ||||||||||||||||||||||| |||||| |
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| T |
2990841 |
ataaaaacaacctaaatttatatttgcgcctaatttcggcctcgccgttcccctcaaaacaccacaaacagttgtttgtggacaatttccaagctcacat |
2990742 |
T |
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| Q |
117 |
agccctat |
124 |
Q |
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| T |
2990741 |
agtcctat |
2990734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 121
Target Start/End: Complemental strand, 51875434 - 51875330
Alignment:
| Q |
17 |
ataaaaacaaccaaaattgatatttgcacctactttaggccttgctgttcctcttaacaccccacaacctgttgtttgtggacaatttccaagttcacat |
116 |
Q |
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||||||| | || |||||||||||||||||||| |||| || || | |||||||| || |||||||| ||||||||||| ||||| |||| ||||| |
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| T |
51875434 |
ataaaaagaccccaaattgatatttgcacctaccgtaggtctagcactacctcttaaaacaccacaacccgttgtttgtgggcaattcccaatctcacaa |
51875335 |
T |
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| Q |
117 |
agccc |
121 |
Q |
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||||| |
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| T |
51875334 |
agccc |
51875330 |
T |
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