View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16380_low_32 (Length: 249)
Name: NF16380_low_32
Description: NF16380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16380_low_32 |
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Alignment Details
Target: chr6 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 12 - 231
Target Start/End: Complemental strand, 5952972 - 5952753
Alignment:
| Q |
12 |
gataatactgcatgtatataaactctttctatttctgttttaggtgaataccatatatttaaactctttctatttttaatcatattgttatatatatagt |
111 |
Q |
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| T |
5952972 |
gataatactgcatgtatataaactctttctatttctgttttaggtgaataccatatatttaaactctttctatttttaatcatattgttatatatatagt |
5952873 |
T |
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| Q |
112 |
taagatcaagaattcaacatgtattattgtgatcataaaaaggacaacaacgatggtagagctgagcatagttacatggaaactgacccaactggtcgct |
211 |
Q |
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| T |
5952872 |
taagatcaagaattcaacatgtattattgtgatcataaaaaggacaacaacgatggtagagctgagcatagttacatggaaactgacccaactggtcgct |
5952773 |
T |
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| Q |
212 |
atgccaaggtaagttcaaat |
231 |
Q |
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|||||||||||||||||||| |
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| T |
5952772 |
atgccaaggtaagttcaaat |
5952753 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 146 - 225
Target Start/End: Original strand, 28087363 - 28087445
Alignment:
| Q |
146 |
ataaaaaggacaacaacgatggtagagctgagcatagttacatggaaactgacccaactggt---cgctatgccaaggtaagt |
225 |
Q |
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| T |
28087363 |
ataaaaagggaaacgatgatggtagagttgagcatcgttacatggaaactgacctaactggtgggcgctatgccaaggtaagt |
28087445 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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