View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16380_low_38 (Length: 237)
Name: NF16380_low_38
Description: NF16380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16380_low_38 |
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Alignment Details
Target: chr7 (Bit Score: 174; Significance: 9e-94; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 45086555 - 45086771
Alignment:
| Q |
1 |
ttacaatagattcataattaaatatactcaatattttatggttttttcaaagtgaagatgggtnnnnnnnngaaatgagatgatgttgcatccgattgtt |
100 |
Q |
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| T |
45086555 |
ttacaatagattcataattaaatatactcaatattttatggttttttcaaagtgaagatgggtaaaaaaa--aaatgagatgatgttgcatccgattgtt |
45086652 |
T |
|
| Q |
101 |
gaagatcaacttgaatgtcctccaccttatgtcaccttcgagctcctcaatcttatctttgttctctctaaccaaaccatgtcccctttaatcctcccag |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
45086653 |
gaagatcaacttgaatgtcctccaccttatgtcaccttcgagctcctcagtcttatctttgt--tctctaaccaaaccatgtcccctttaatcctcccag |
45086750 |
T |
|
| Q |
201 |
gttgagtttatctctagaacc |
221 |
Q |
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||||||||||||||||||||| |
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| T |
45086751 |
gttgagtttatctctagaacc |
45086771 |
T |
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