View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16380_low_42 (Length: 210)

Name: NF16380_low_42
Description: NF16380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16380_low_42
NF16380_low_42
[»] chr8 (2 HSPs)
chr8 (109-188)||(4639707-4639786)
chr8 (16-56)||(4639831-4639871)
[»] chr4 (4 HSPs)
chr4 (16-53)||(1227928-1227965)
chr4 (16-48)||(12572592-12572624)
chr4 (16-48)||(33161854-33161886)
chr4 (16-48)||(47043809-47043841)
[»] chr2 (1 HSPs)
chr2 (16-47)||(12967446-12967477)
[»] chr7 (2 HSPs)
chr7 (16-48)||(26502251-26502283)
chr7 (16-48)||(26590431-26590463)
[»] chr5 (1 HSPs)
chr5 (16-48)||(40017173-40017205)
[»] chr3 (1 HSPs)
chr3 (16-48)||(2325432-2325464)
[»] chr1 (2 HSPs)
chr1 (16-48)||(39650423-39650455)
chr1 (16-48)||(50065688-50065720)


Alignment Details
Target: chr8 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 109 - 188
Target Start/End: Complemental strand, 4639786 - 4639707
Alignment:
Q  109 cattttgagtatagtttcacacatatcatatcccagtgacacaaatgtgattacaaatgtctcttacctccctgccactt 188  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4639786 cattttgagtatagtttcacacatatcatatcccagtgacacaaatgtgattacaaatgtctcttacctccctgccactt 4639707  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 56
Target Start/End: Complemental strand, 4639871 - 4639831
Alignment:
Q  16 cacagaccaaaaaacgtttgttcttcaattctgaccacaga 56  Q
    ||||||||||||||| ||||||||||||||||||||| |||    
T  4639871 cacagaccaaaaaacatttgttcttcaattctgaccataga 4639831  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 53
Target Start/End: Original strand, 1227928 - 1227965
Alignment:
Q  16 cacagaccaaaaaacgtttgttcttcaattctgaccac 53  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  1227928 cacagaccaaaaaacgtttgttcttcagttctgaccac 1227965  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 48
Target Start/End: Complemental strand, 12572624 - 12572592
Alignment:
Q  16 cacagaccaaaaaacgtttgttcttcaattctg 48  Q
    ||||||||||||||||||||||||||| |||||    
T  12572624 cacagaccaaaaaacgtttgttcttcagttctg 12572592  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 48
Target Start/End: Complemental strand, 33161886 - 33161854
Alignment:
Q  16 cacagaccaaaaaacgtttgttcttcaattctg 48  Q
    ||||||||||||||||||||||||||| |||||    
T  33161886 cacagaccaaaaaacgtttgttcttcagttctg 33161854  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 48
Target Start/End: Original strand, 47043809 - 47043841
Alignment:
Q  16 cacagaccaaaaaacgtttgttcttcaattctg 48  Q
    ||||||||||||||||||||||||||| |||||    
T  47043809 cacagaccaaaaaacgtttgttcttcagttctg 47043841  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 47
Target Start/End: Complemental strand, 12967477 - 12967446
Alignment:
Q  16 cacagaccaaaaaacgtttgttcttcaattct 47  Q
    ||||||||||||||||||||||||||||||||    
T  12967477 cacagaccaaaaaacgtttgttcttcaattct 12967446  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 48
Target Start/End: Original strand, 26502251 - 26502283
Alignment:
Q  16 cacagaccaaaaaacgtttgttcttcaattctg 48  Q
    ||||||||||||||||||||||||||| |||||    
T  26502251 cacagaccaaaaaacgtttgttcttcagttctg 26502283  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 48
Target Start/End: Complemental strand, 26590463 - 26590431
Alignment:
Q  16 cacagaccaaaaaacgtttgttcttcaattctg 48  Q
    ||||||||||||||||||||||||||| |||||    
T  26590463 cacagaccaaaaaacgtttgttcttcagttctg 26590431  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 48
Target Start/End: Original strand, 40017173 - 40017205
Alignment:
Q  16 cacagaccaaaaaacgtttgttcttcaattctg 48  Q
    ||||||||||||||||||||||||||| |||||    
T  40017173 cacagaccaaaaaacgtttgttcttcagttctg 40017205  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 48
Target Start/End: Original strand, 2325432 - 2325464
Alignment:
Q  16 cacagaccaaaaaacgtttgttcttcaattctg 48  Q
    ||||||||||||||||||||||||||| |||||    
T  2325432 cacagaccaaaaaacgtttgttcttcagttctg 2325464  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 48
Target Start/End: Complemental strand, 39650455 - 39650423
Alignment:
Q  16 cacagaccaaaaaacgtttgttcttcaattctg 48  Q
    ||||||||||||||||||||||||||| |||||    
T  39650455 cacagaccaaaaaacgtttgttcttcagttctg 39650423  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 48
Target Start/End: Complemental strand, 50065720 - 50065688
Alignment:
Q  16 cacagaccaaaaaacgtttgttcttcaattctg 48  Q
    ||||||||||||||||||||||||||| |||||    
T  50065720 cacagaccaaaaaacgtttgttcttcagttctg 50065688  T

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