View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16380_low_7 (Length: 486)
Name: NF16380_low_7
Description: NF16380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16380_low_7 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 457; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 457; E-Value: 0
Query Start/End: Original strand, 18 - 486
Target Start/End: Complemental strand, 30502139 - 30501671
Alignment:
| Q |
18 |
attgaaaatgtcacggctagccgtaagtcgaaacaaacagaaacttttaggaaaatggctagcagaggataaacttgaatgcactgaagagcttggtgac |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30502139 |
attgaaaatgtcacggctagccgtaagtcgaaacaaacagaaacttttaggaaaatggctagcagaggataaacttgaatgcactgaagagcttggtgac |
30502040 |
T |
|
| Q |
118 |
cttgtgaaggttctgttctcatacaaatctataattgattcttagtttctttatcagttgaatatacttatggttatcaatatcctaagatacatgcaag |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30502039 |
cttgtgaaggttctgttctcatacaaatctataattgattcttagtttctttatcagttgaatatacttatggttatcaatatcctaagatacatgcaag |
30501940 |
T |
|
| Q |
218 |
ttgtatctcgattctcgatgctagatgctagttgtatcccgattctcgattctagtactcttaactatttgataatgtatcttacgatttgtgataagat |
317 |
Q |
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|||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30501939 |
ttgtatctcgattctcgatgctaggtgctagttgtatctcgattctcgattctagtactcttaactatttgataatgtatcttacgatttgtgataagat |
30501840 |
T |
|
| Q |
318 |
ccaattctcaatttagaaaatagttcttctgattcactatttgaatctcgattcaataaccatatttagtttgctatatattcctttcgttcgtctattc |
417 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
30501839 |
ccaattctcaatttagaaaatagttcttctgattcactatttgaatctcgattcaataaccatatttagtttgctatatattcctttcgtttgtctattc |
30501740 |
T |
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| Q |
418 |
aatcttataagacacacatctaatgcagaaagtggataaagacctggcattgaaaatatatactaaagc |
486 |
Q |
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| T |
30501739 |
aatcttataagacacacatctaatgcagaaagtggataaagacctggcattgaaaatatatactaaagc |
30501671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 457; E-Value: 0
Query Start/End: Original strand, 18 - 486
Target Start/End: Complemental strand, 30542482 - 30542014
Alignment:
| Q |
18 |
attgaaaatgtcacggctagccgtaagtcgaaacaaacagaaacttttaggaaaatggctagcagaggataaacttgaatgcactgaagagcttggtgac |
117 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30542482 |
attgaaaatgtcacggctagccgtaagtcgaaacaaacagaaacttttaggaaaatggctagcagaggataaacttgaatgcactgaagagcttggtgac |
30542383 |
T |
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| Q |
118 |
cttgtgaaggttctgttctcatacaaatctataattgattcttagtttctttatcagttgaatatacttatggttatcaatatcctaagatacatgcaag |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30542382 |
cttgtgaaggttctgttctcatacaaatctataattgattcttagtttctttatcagttgaatatacttatggttatcaatatcctaagatacatgcaag |
30542283 |
T |
|
| Q |
218 |
ttgtatctcgattctcgatgctagatgctagttgtatcccgattctcgattctagtactcttaactatttgataatgtatcttacgatttgtgataagat |
317 |
Q |
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|||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30542282 |
ttgtatctcgattctcgatgctaggtgctagttgtatctcgattctcgattctagtactcttaactatttgataatgtatcttacgatttgtgataagat |
30542183 |
T |
|
| Q |
318 |
ccaattctcaatttagaaaatagttcttctgattcactatttgaatctcgattcaataaccatatttagtttgctatatattcctttcgttcgtctattc |
417 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
30542182 |
ccaattctcaatttagaaaatagttcttctgattcactatttgaatctcgattcaataaccatatttagtttgctatatattcctttcgtttgtctattc |
30542083 |
T |
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| Q |
418 |
aatcttataagacacacatctaatgcagaaagtggataaagacctggcattgaaaatatatactaaagc |
486 |
Q |
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| T |
30542082 |
aatcttataagacacacatctaatgcagaaagtggataaagacctggcattgaaaatatatactaaagc |
30542014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 56 - 128
Target Start/End: Original strand, 26027212 - 26027284
Alignment:
| Q |
56 |
agaaacttttaggaaaatggctagcagaggataaacttgaatgcactgaagagcttggtgaccttgtgaaggt |
128 |
Q |
| |
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|||| ||||| | ||| |||||||||||||| ||||| ||||||| ||| |||||||| |||||||||||||| |
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| T |
26027212 |
agaatcttttggaaaattggctagcagaggacaaactggaatgcagtgaggagcttggcgaccttgtgaaggt |
26027284 |
T |
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