View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16380_low_8 (Length: 478)
Name: NF16380_low_8
Description: NF16380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16380_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 447; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 16 - 466
Target Start/End: Complemental strand, 41277204 - 41276754
Alignment:
| Q |
16 |
aatagtgacaaaatttacctacaaaacatgtcagttgaaaattatgacaaaacaagggagaatagaactaggatttttcactacaaatctttctaagcta |
115 |
Q |
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| T |
41277204 |
aatagtgacaaaatttacctacaaaacatgtcagttgaaaattatgacaaaacaagggagaatagaactaggatttttcactacaaatctttctaagcta |
41277105 |
T |
|
| Q |
116 |
aattgcatttctcctagcctagttgagtcacactcagaacattcttcatagttaccatcaacttcattcactgcagttccagcaattatcctgcaaacta |
215 |
Q |
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| T |
41277104 |
aattgcatttctcctagcctagttgagtcacactcagaacattcttcatagttaccatcaacttcattcactgcagttccagcaattatcctgcaaacta |
41277005 |
T |
|
| Q |
216 |
ttaaaactcttttcacattcttcactcttgcattgacactttttctgttactcaaatctttctcacatgtattcaacagaatctccgcgtgttccgcgtc |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41277004 |
ttaaaactcttttcacattcttcactcttgcattgacactttttctgttactcaaatctttctcacatgtattcaacagaatctccgcgtgttccgcgtc |
41276905 |
T |
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| Q |
316 |
aaaattgaattgaattacttgacaaaatcgacacgatggatctttacaaagatcatgaactttctttataggtttcccttggaaacatctcattgtagtg |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
41276904 |
aaaattgaattgaattacttgacaaaatcgacacgatggatctttacaaagatcatgaactttcttcataggtttcccttggaaacatctcattgtagtg |
41276805 |
T |
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| Q |
416 |
acatagaatctcaacaattcatttccatctactgtgcttcttggatgcctt |
466 |
Q |
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| T |
41276804 |
acatagaatctcaacaattcatttccatctactgtgcttcttggatgcctt |
41276754 |
T |
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