View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16380_low_9 (Length: 451)
Name: NF16380_low_9
Description: NF16380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16380_low_9 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 399; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 1 - 434
Target Start/End: Complemental strand, 47428867 - 47428433
Alignment:
| Q |
1 |
aactctaggagggtggcaaatggctttaacaggaaaagcccttgcaggccaaagccaataacaaatagtcaaagcagcacaagaacacaaaatgagcatt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47428867 |
aactctaggagggtggcaaatggctttaacaggaaaagcccttgcaggccaaagccaataacaaatagtcaaagcagcacaagaacacaaaatgagcatt |
47428768 |
T |
|
| Q |
101 |
attaaacaagtatagaagaatgagacatatataatgcatgttatgtaac-agattaaatctaacatatgaacaaaactatatctcttacgcgtatttatt |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47428767 |
attaaacaagtatagaagaatgagacatatataatgcatgttatgtaacaagattaaatctaacatatgaacaaaactatatctcttacgcgtatttatt |
47428668 |
T |
|
| Q |
200 |
attttgatattatagccttagcatttgttactcttcctgtttagttactaagtcctattaaaccagtaagtagaattttggaaggtgagaaggnnnnnnn |
299 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47428667 |
attttgatattatagccttagcatttgttactcttcctgtttagttactaaatcctattaaaccagtaagtagaattttggaaggtgagaaggaaaaaaa |
47428568 |
T |
|
| Q |
300 |
ntggggaaggcaagcaaatggattagaaaccttcttctagggaaaaaagaagagaacttcaagcagattgatacattctgccccgataataagaccgcaa |
399 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47428567 |
atggggaaggcaagcaaatggattagaaaccttcttctagggaaaaaagaagagaacttcaagcagattgatacattctgccccgataataagaccgcaa |
47428468 |
T |
|
| Q |
400 |
acacggttaatagtagtagcagcagtaatagtaat |
434 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
47428467 |
acacggttaatagtagtagcagcagtaatagtaat |
47428433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University