View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16381_high_8 (Length: 434)
Name: NF16381_high_8
Description: NF16381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16381_high_8 |
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Alignment Details
Target: chr3 (Bit Score: 126; Significance: 8e-65; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 129 - 373
Target Start/End: Original strand, 45880591 - 45880844
Alignment:
| Q |
129 |
taattgtggaatatatcaaccaacaaaataatttttgctaaagagcacccacttaagattactaggttgaa--------tctggacacaatcatgtaagt |
220 |
Q |
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| T |
45880591 |
taattgtggaatat--caaccaacaaattattttttgctgaagagcactcacttaagattacttaatttaaatctggagtctggacacaatcatgtaagt |
45880688 |
T |
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| Q |
221 |
ttc---gaacaatttgtttctctatccattgatgataattaggtataactagacagacaattataacaatctctcttaattaagaagttgaatactcaac |
317 |
Q |
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| T |
45880689 |
ttatttgaacaatttgtttctctatccattgatgataattagttataactagacagacaattataacaatctctcctaattaagaagttgaaaactcagc |
45880788 |
T |
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| Q |
318 |
aatctactattcaaacttctgccgatggcaaattttgaagcaagaaattaattatt |
373 |
Q |
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| T |
45880789 |
aatctaccatgtaaacttgtgccgatggcgaattttgaagcaagaagttaattatt |
45880844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 45880405 - 45880532
Alignment:
| Q |
1 |
agttgcaaagttcatgttaagctagatattaattcaaaccaccagtcccggggattcaagatgaacaaaagcttattttgcatgttgggaactaaatcta |
100 |
Q |
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| T |
45880405 |
agttgcaaagttcatgttaagctagatattaattcaaaccaccagtcccggggattcaagatgcacaaaagcttattttgcatgctgggaactaaatc-- |
45880502 |
T |
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| Q |
101 |
attaatctcggttgtgaacaaaacatcctaat |
132 |
Q |
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| T |
45880503 |
--aaatctcggttgtgaacaaaacatcctaat |
45880532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 297 - 373
Target Start/End: Original strand, 45855727 - 45855803
Alignment:
| Q |
297 |
ttaagaagttgaatactcaacaatctactattcaaacttctgccgatggcaaattttgaagcaagaaattaattatt |
373 |
Q |
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| T |
45855727 |
ttaagaagttgcaaactcagcaatctaccatgtaaacttgtgccgatggcgaattttgaagcaagaagttaattatt |
45855803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 141 - 255
Target Start/End: Original strand, 45855558 - 45855678
Alignment:
| Q |
141 |
atatcaaccaacaaaataatttttgctaaagagcac--ccacttaagattact-aggttgaatctggacacaatcatgtaagtttc---gaacaatttgt |
234 |
Q |
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| T |
45855558 |
atattaaccaacagattaattcttgcaatagagcacatccacataagattacttaagttgaaactggacacattcttgtaagtttatttgaacaatttgt |
45855657 |
T |
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| Q |
235 |
ttctctatccattgatgataa |
255 |
Q |
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| T |
45855658 |
ttctctatccattgatgataa |
45855678 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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