View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16381_low_1 (Length: 640)
Name: NF16381_low_1
Description: NF16381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16381_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 570; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 570; E-Value: 0
Query Start/End: Original strand, 1 - 622
Target Start/End: Complemental strand, 29676765 - 29676145
Alignment:
| Q |
1 |
acactactaatgccaaaaacataagccacatacagacaccgatacataaaaaataaaccaaacattttatgattaaactactaacgagctcatgcgtttg |
100 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
29676765 |
acactactaatgccaaaaacataaggcacatacagacaccgatacataaaaaataaaccaaatattttatgattaaactactaacgagctcatgcgtttg |
29676666 |
T |
|
| Q |
101 |
catagtcctgagaaaaatgtagcggaaaacagatttgtgaaattctgccacatgtcagtagaaattaggaaaatactatttataagatagatagagatca |
200 |
Q |
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|||||||||||||||||||| || |||||||||| | ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
29676665 |
catagtcctgagaaaaatgt-gctgaaaacagatgtatgaaattctgctacatgtcagtagaaattaggaaaatactatttataagatagatagggatca |
29676567 |
T |
|
| Q |
201 |
aagaggatacgcacgctgagagttcctggcctcccccgttaaatccagtactccaaaagattccagcaggtttgcctgcgagtgcttgagacgcccacaa |
300 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29676566 |
aagaggatactcacgctgagagttcctggcctcccccgttaaatccagtactccaaaagattccagcaggtttgcctgcgagtgcttgagacgcccacaa |
29676467 |
T |
|
| Q |
301 |
ctctccagtagcgtcaaagaaggccttgagctggcttggcatcataccaaaacgtgaaggaaaaccaaatatcaaagcatcagcctccacaagttgttcc |
400 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29676466 |
ctctccagtagcgtcaaagaatgccttgagctggctaggcatcataccaaaacgtgaaggaaaaccaaatatcaaagcatcagcctccacaagttgttcc |
29676367 |
T |
|
| Q |
401 |
ggcttaatgtcagctacatcatctggtttaggaggtgccttcatcttttccaatattcgatccgaaagaatttcaggtacctgttatcagcaaattcaaa |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
29676366 |
ggcttaatgtcagctacatcatctggtttaggaggtgccttcatcttttccaatattcgatccgaaagaatttcaggtacctgttatcagcaaattcaaa |
29676267 |
T |
|
| Q |
501 |
ccaaactactaactcagactaaaataatccgaattacacgagaatcaaatattttcttttacaatagtagtacaacacattcttaatgatagttgaaaaa |
600 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29676266 |
ccaaactactaactcagactaaaataatccgaattacacaagaatcaaatattttcttttacaatagtagtacaacacattcttaatgatagttgaaaaa |
29676167 |
T |
|
| Q |
601 |
ttaccctccaaagtgttgcttc |
622 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
29676166 |
ttaccctccaaagtgttgcttc |
29676145 |
T |
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